*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-PxG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-PxG_31
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-PxG [ View Map Set Info ]
Map Name: Oat-2016-PxG_31
Map Start: 0
Map Stop: 6.6
Features by Type:
23 locus
23 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 23 of 23.
Oat - Oat-2016-PxG - Oat-2016-PxG_31
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES02_c12289_381 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_ES02_c12289_381 locus 131.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES02_c12289 locus 29.09 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_ES02_c12289_381 locus 131.7 () Automated name-based View Maps
GMI_ES15_c10742_192 locus 2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_ES15_c10742_192 locus 131.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_ES15_c10742_192 locus 131.4 () Automated name-based View Maps
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-6 GMI_ES15_c10742 locus 127.3 () Automated name-based View Maps
avgbs_100136 locus 2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 avgbs_100136 locus 91 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_100136 locus 91 () Automated name-based View Maps
avgbs_116271 locus 2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 avgbs_116271 locus 130.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 avgbs_116271 locus 130.6 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_5 avgbs_116271 locus 1.8 () Automated name-based View Maps
avgbs_77775 locus 2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 avgbs_77775 locus 131.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 avgbs_77775 locus 131.2 () Automated name-based View Maps
GMI_DS_A3_289_88 locus 2 Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_DS_A3_289 locus 20.65 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_DS_A3_289_88 locus 131.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_DS_A3_289_88 locus 131.4 () Automated name-based View Maps
GMI_ES17_c2417_374 locus 2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c2417_374 locus 67.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c2417_374 locus 67.4 () Automated name-based View Maps
GMI_ES01_c6574_349 locus 2 Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES01_c6574_349 locus 2 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES01_c6574 locus 85.67 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_ES01_c6574_349 locus 131.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_ES01_c6574_349 locus 131.4 () Automated name-based View Maps
avgbs_88512 locus 3.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 avgbs_88512 locus 132.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 avgbs_88512 locus 132.1 () Automated name-based View Maps
GMI_ES03_c2377_458 locus 3.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_ES03_c2377_458 locus 133.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_ES03_c2377_458 locus 133.1 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_5 GMI_ES03_c2377_458 locus 0 () Automated name-based View Maps
GMI_ES14_c13398_377 locus 5.5 Oat - Oat-2016-AxM - Oat-2016-AxM_15 GMI_ES14_c13398_377 locus 2.6 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_19 GMI_ES14_c13398_377 locus 2.53 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_ES14_c13398_377 locus 111.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_ES14_c13398_377 locus 111.7 () Automated name-based View Maps
GMI_DS_LB_10784 locus 6.6 Oat - Oat-2016-AxM - Oat-2016-AxM_15 GMI_DS_LB_10784 locus 5.3 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_19 GMI_DS_LB_10784 locus 5.13 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_DS_LB_10784 locus 112.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_DS_LB_10784 locus 112.5 () Automated name-based View Maps
GMI_DS_A3_74_292 locus 6.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_DS_A3_74_292 locus 110.4 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_DS_A3_74 locus 85.06 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_19 GMI_DS_A3_74_292 locus 1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 GMI_DS_A3_74_292 locus 110.4 () Automated name-based View Maps
GMI_ES14_c2753_587 locus 6.6 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_19 GMI_ES14_c2753_587 locus 5.46 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-26 GMI_ES14_c2753_587 locus 7.23 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_15 GMI_ES14_c2753_587 locus 5.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_ES14_c2753_587 locus 112.5 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_9 GMI_ES14_c2753_587 locus 38.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_ES14_c2753_587 locus 112.5 () Automated name-based View Maps
GMI_ES_LB_12093 locus 6.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 GMI_ES_LB_12093 locus 110.4 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_9 GMI_ES_LB_12093 locus 37.4 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-26 GMI_ES_LB_12093 locus 13.62 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES_LB_12093 locus 110.4 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_19 GMI_ES_LB_12093 locus 1 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-36 GMI_ES_LB_12093 locus 13.22 (cM) Automated name-based View Maps
GMI_ES17_c2417_887 locus 6.6 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-26 GMI_ES17_c2417_887 locus 10.92 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 GMI_ES17_c2417_887 locus 110.4 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_19 GMI_ES17_c2417_887 locus 1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES17_c2417_887 locus 110.4 () Automated name-based View Maps
GMI_DS_LB_4454 locus 6.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 GMI_DS_LB_4454 locus 110.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_DS_LB_4454 locus 110.4 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_19 GMI_DS_LB_4454 locus 1 () Automated name-based View Maps
GMI_ES03_c9523_612 locus 6.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c9523_612 locus 91.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES03_c9523_612 locus 91.6 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4 GMI_ES03_c9523_612 locus 46.3 () Automated name-based View Maps
GMI_DS_LB_4563 locus 6.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_DS_LB_4563 locus 91.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_DS_LB_4563 locus 91.6 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4 GMI_DS_LB_4563 locus 46.3 () Automated name-based View Maps
GMI_ES03_c1075_753 locus 6.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_ES03_c1075_753 locus 112.5 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_19 GMI_ES03_c1075_753 locus 4.1 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_15 GMI_ES03_c1075_753 locus 3.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_ES03_c1075_753 locus 112.5 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-1 GMI_ES03_c1075_753 locus 95.58 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_5 GMI_ES03_c1075_753 locus 0 () Automated name-based View Maps
GMI_ES02_c23736_166 locus 6.6 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-26 GMI_ES02_c23736_166 locus 12.72 (cM) Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_15A GMI_ES02_c23736 locus 85.06 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 GMI_ES02_c23736_166 locus 110.4 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_19 GMI_ES02_c23736_166 locus 1 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_9 GMI_ES02_c23736_166 locus 37.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 GMI_ES02_c23736_166 locus 110.4 () Automated name-based View Maps
GMI_ES_LB_11175 locus 6.6 Oat - Oat-2016-AxM - Oat-2016-AxM_5b GMI_ES_LB_11175 locus 8.8 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_19 GMI_ES_LB_11175 locus 0 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_36 GMI_ES_LB_11175 locus 8.71 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES_LB_11175 locus 111.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES_LB_11175 locus 111.7 () Automated name-based View Maps
GMI_ES22_c9552_420 locus 6.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 GMI_ES22_c9552_420 locus 112.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 GMI_ES22_c9552_420 locus 112.5 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.