*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-PxG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-PxG_33
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)




Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-PxG [ View Map Set Info ]
Map Name: Oat-2016-PxG_33
Map Start: 0.00
Map Stop: 18.40
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Oat - Oat-2016-PxG - Oat-2016-PxG_33
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES17_c13851_136 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES17_c13851_136 locus 13.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES17_c13851_136 locus 13.70 () Automated name-based View Maps
GMI_ES15_c9068_311 locus 1.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES15_c9068_311 locus 14.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES15_c9068_311 locus 14.70 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-20 GMI_ES15_c9068_311 locus 2.59 (cM) Automated name-based View Maps
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-16 GMI_ES15_c9068 locus 3.90 () Automated name-based View Maps
GMI_ES15_lrc12312_503 locus 1.10 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES15_lrc12312_503 locus 14.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES15_lrc12312_503 locus 14.70 () Automated name-based View Maps
GMI_ES01_c8343_342 locus 5.50 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES01_c8343_342 locus 19.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES01_c8343_342 locus 19.80 () Automated name-based View Maps
GMI_ES01_c12063_110 locus 5.50 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES01_c12063_110 locus 19.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES01_c12063_110 locus 19.80 () Automated name-based View Maps
avgbs_119712 locus 7.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 avgbs_119712 locus 21.50 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_6b avgbs_119712 locus 81.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 avgbs_119712 locus 21.50 () Automated name-based View Maps
GMI_ES03_c6181_441 locus 7.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES03_c6181_441 locus 21.50 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_14 GMI_ES03_c6181_441 locus 5.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES03_c6181_441 locus 21.50 () Automated name-based View Maps
GMI_ES01_c14349_357 locus 7.60 Oat - Oat-2016-SxH - Oat-2016-SxH_14 GMI_ES01_c14349_357 locus 4.30 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_6b GMI_ES01_c14349_357 locus 81.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES01_c14349_357 locus 21.50 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 GMI_ES01_c14349_357 locus 24.00 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_19A GMI_ES01_c14349 locus 7.54 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES01_c14349_357 locus 21.50 () Automated name-based View Maps
avgbs_231738 locus 7.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 avgbs_231738 locus 21.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 avgbs_231738 locus 21.50 () Automated name-based View Maps
GMI_ES01_c19245_178 locus 15.00 Oat - Oat-2016-BxG - Oat-2016-BxG_16c GMI_ES01_c19245_178 locus 33.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES01_c19245_178 locus 26.60 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_14 GMI_ES01_c19245_178 locus 11.00 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-5 GMI_ES01_c19245_178 locus 13.08 (cM) Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-20 GMI_ES01_c19245_178 locus 44.81 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 GMI_ES01_c19245_178 locus 30.40 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_19A GMI_ES01_c19245 locus 13.06 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES01_c19245_178 locus 26.60 () Automated name-based View Maps
avgbs_7557 locus 15.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 avgbs_7557 locus 26.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 avgbs_7557 locus 26.60 () Automated name-based View Maps
avgbs_107818 locus 15.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 avgbs_107818 locus 26.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 avgbs_107818 locus 26.60 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 avgbs_107818 locus 30.40 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_14 avgbs_107818 locus 11.00 () Automated name-based View Maps
GMI_ES01_c3073_528 locus 18.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES01_c3073_528 locus 35.80 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_16c GMI_ES01_c3073_528 locus 29.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES01_c3073_528 locus 35.80 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_6b GMI_ES01_c3073_528 locus 65.00 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 GMI_ES01_c3073_528 locus 49.60 () Automated name-based View Maps
GMI_ES_LB_11092 locus 18.40 Oat - Oat-2016-BxG - Oat-2016-BxG_16c GMI_ES_LB_11092 locus 29.50 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 GMI_ES_LB_11092 locus 49.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES_LB_11092 locus 35.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES_LB_11092 locus 35.80 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_6b GMI_ES_LB_11092 locus 65.00 () Automated name-based View Maps
avgbs_229692 locus 18.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 avgbs_229692 locus 35.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 avgbs_229692 locus 35.80 () Automated name-based View Maps
GMI_GBS_71628 locus 18.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_GBS_71628 locus 35.80 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_16c GMI_GBS_71628 locus 29.50 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-37 GMI_GBS_71628 locus 8.81 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_6b GMI_GBS_71628 locus 65.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_GBS_71628 locus 35.80 () Automated name-based View Maps
GMI_ES15_c3641_387 locus 18.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES15_c3641_387 locus 35.80 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_6b GMI_ES15_c3641_387 locus 65.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES15_c3641_387 locus 35.80 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 GMI_ES15_c3641_387 locus 49.60 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.