*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-PxG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-PxG_6a
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-PxG [ View Map Set Info ]
Map Name: Oat-2016-PxG_6a
Map Start: 0.00
Map Stop: 78.50
Features by Type:
70 locus
70 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 70.       of 3 | Next
Oat - Oat-2016-PxG - Oat-2016-PxG_6a
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES14_c10785_566 locus 0.00 Oat - Oat-2016-IL4 - Oat-2016-IL4_20 GMI_ES14_c10785_566 locus 74.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c10785_566 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES14_c10785_566 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES14_c10785_566 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES14_c10785_566 locus 108.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c10785_566 locus 0.00 () Automated name-based View Maps
GMI_ES14_c10785_407 locus 0.00 Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES14_c10785_407 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES14_c10785_407 locus 108.90 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES14_c10785_407 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES14_c10785_407 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES14_c10785_407 locus 0.00 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES14_c10785_407 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_20 GMI_ES14_c10785_407 locus 74.70 () Automated name-based View Maps
avgbs_6873 locus 1.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_6873 locus 1.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_6873 locus 1.10 () Automated name-based View Maps
GMI_ES17_c7320_909 locus 1.20 Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES17_c7320_909 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES17_c7320_909 locus 1.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c7320_909 locus 1.10 () Automated name-based View Maps
avgbs_200851 locus 10.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_200851 locus 9.60 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 avgbs_200851 locus 6.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_200851 locus 9.60 () Automated name-based View Maps
avgbs_200382 locus 10.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_200382 locus 9.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_200382 locus 9.60 () Automated name-based View Maps
GMI_ES15_c17743_247 locus 18.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES15_c17743_247 locus 129.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 GMI_ES15_c17743_247 locus 129.60 () Automated name-based View Maps
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-8 GMI_ES15_c17743 locus 18.70 () Automated name-based View Maps
avgbs_201544 locus 27.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_201544 locus 27.40 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 avgbs_201544 locus 12.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_201544 locus 27.40 () Automated name-based View Maps
avgbs_119824 locus 27.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_119824 locus 27.40 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 avgbs_119824 locus 72.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_119824 locus 27.40 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_3 avgbs_119824 locus 29.90 () Automated name-based View Maps
avgbs_86704 locus 27.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_86704 locus 27.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_86704 locus 27.40 () Automated name-based View Maps
GMI_ES15_c9667_138 locus 34.80 Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES15_c9667_138 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES15_c9667_138 locus 57.50 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES15_c9667_138 locus 31.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES15_c9667_138 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES15_c9667_138 locus 64.20 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES15_c9667_138 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES15_c9667_138 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES15_c9667_138 locus 21.10 () Automated name-based View Maps
GMI_ES22_c567_627 locus 34.80 Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 GMI_ES22_c567_627 locus 21.10 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_28b GMI_ES22_c567_627 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_4 GMI_ES22_c567_627 locus 64.20 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS13 GMI_ES22_c567_627 locus 57.50 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_1a GMI_ES22_c567_627 locus 31.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_ES22_c567_627 locus 34.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES22_c567_627 locus 34.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_39 GMI_ES22_c567_627 locus 0.00 (cM) Automated name-based View Maps
avgbs_67846 locus 43.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_67846 locus 44.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_67846 locus 44.20 () Automated name-based View Maps
avgbs_19304 locus 45.00 Oat - Oat-2016-OxT - Oat-2016-OxT_3 avgbs_19304 locus 56.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_19304 locus 50.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_19304 locus 50.50 () Automated name-based View Maps
avgbs_86725 locus 45.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_86725 locus 50.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_86725 locus 50.50 () Automated name-based View Maps
avgbs_229308 locus 45.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_229308 locus 50.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_229308 locus 50.50 () Automated name-based View Maps
avgbs_230438 locus 45.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_230438 locus 50.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_230438 locus 50.50 () Automated name-based View Maps
avgbs_232627 locus 45.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_232627 locus 56.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_232627 locus 56.50 () Automated name-based View Maps
GMI_DS_CC8733_129 locus 45.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 GMI_DS_CC8733_129 locus 56.50 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_DS_CC8733 locus 56.17 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_DS_CC8733_129 locus 56.50 () Automated name-based View Maps
avgbs_97487 locus 45.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_97487 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_97487 locus 56.50 () Automated name-based View Maps
avgbs_40833 locus 45.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_40833 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_40833 locus 56.50 () Automated name-based View Maps
avgbs_36423 locus 45.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_36423 locus 56.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_36423 locus 56.50 () Automated name-based View Maps
avgbs_98052 locus 45.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_98052 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_98052 locus 56.50 () Automated name-based View Maps
avgbs_53477 locus 45.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_53477 locus 56.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_53477 locus 56.50 () Automated name-based View Maps
avgbs_121147 locus 45.60 Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss4 avgbs_121147 locus 39.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 avgbs_121147 locus 55.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_121147 locus 55.60 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.