*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-PxG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-PxG_6b
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-PxG [ View Map Set Info ]
Map Name: Oat-2016-PxG_6b
Map Start: 0.00
Map Stop: 96.60
Features by Type:
119 locus
119 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 119.       of 5 | Next
Oat - Oat-2016-PxG - Oat-2016-PxG_6b
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_32526 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 avgbs_32526 locus 2.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 avgbs_32526 locus 2.00 () Automated name-based View Maps
avgbs_123487 locus 7.50 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_123487 locus 129.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_123487 locus 129.00 () Automated name-based View Maps
GMI_ES01_c15693_417 locus 15.40 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES01_c15693_417 locus 111.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES01_c15693_417 locus 111.70 () Automated name-based View Maps
GMI_ES05_c5597_803 locus 17.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES05_c5597_803 locus 111.40 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES05_c5597_803 locus 65.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES05_c5597_803 locus 111.40 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 GMI_ES05_c5597_803 locus 43.80 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-8 GMI_ES05_c5597_803 locus 21.45 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-5 GMI_ES05_c5597_803 locus 84.13 (cM) Automated name-based View Maps
GMI_ES17_c1233_575 locus 17.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES17_c1233_575 locus 111.40 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES17_c1233_575 locus 65.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES17_c1233_575 locus 111.40 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 GMI_ES17_c1233_575 locus 43.80 () Automated name-based View Maps
avgbs_232546 locus 22.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_232546 locus 90.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_232546 locus 90.30 () Automated name-based View Maps
avgbs_216491 locus 27.10 Oat - Oat-2016-OxT - Oat-2016-OxT_2 avgbs_216491 locus 35.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_216491 locus 103.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_216491 locus 103.80 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 avgbs_216491 locus 74.50 () Automated name-based View Maps
GMI_GBS_76988 locus 30.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_76988 locus 91.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_76988 locus 91.30 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_GBS_76988 locus 114.80 () Automated name-based View Maps
GMI_GBS_81876 locus 30.40 Oat - Oat-2016-OxT - Oat-2016-OxT_2 GMI_GBS_81876 locus 21.30 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13b GMI_GBS_81876 locus 23.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_81876 locus 91.90 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_GBS_81876 locus 59.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_81876 locus 91.90 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP8 GMI_GBS_81876 locus 10.70 () Automated name-based View Maps
GMI_DS_LB_4781 locus 30.40 Oat - Oat-2016-OxT - Oat-2016-OxT_2 GMI_DS_LB_4781 locus 21.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_DS_LB_4781 locus 91.90 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_DS_LB_4781 locus 59.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_DS_LB_4781 locus 91.90 () Automated name-based View Maps
GMI_GBS_107999 locus 31.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_107999 locus 86.80 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_10 GMI_GBS_107999 locus 46.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_107999 locus 86.80 () Automated name-based View Maps
GMI_ES02_c310_458 locus 32.80 Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES02_c310_458 locus 56.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES02_c310_458 locus 86.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES02_c310_458 locus 86.80 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS8 GMI_ES02_c310_458 locus 105.40 () Automated name-based View Maps
GMI_GBS_32694 locus 32.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_32694 locus 86.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_32694 locus 86.80 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_10 GMI_GBS_32694 locus 46.20 () Automated name-based View Maps
GMI_GBS_29683 locus 32.80 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_GBS_29683 locus 86.80 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_10 GMI_GBS_29683 locus 46.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_GBS_29683 locus 86.80 () Automated name-based View Maps
GMI_ES01_lrc29198_650 locus 32.80 Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES01_lrc29198_650 locus 56.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES01_lrc29198_650 locus 86.80 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_7 GMI_ES01_lrc29198_650 locus 49.19 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES01_lrc29198_650 locus 86.80 () Automated name-based View Maps
avgbs_227867 locus 34.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_227867 locus 86.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_227867 locus 86.00 () Automated name-based View Maps
avgbs_9617 locus 34.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_9617 locus 86.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_9617 locus 86.80 () Automated name-based View Maps
avgbs_205839 locus 34.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_205839 locus 86.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_205839 locus 86.80 () Automated name-based View Maps
avgbs_98276 locus 34.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_98276 locus 86.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_98276 locus 86.00 () Automated name-based View Maps
avgbs_229957 locus 34.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_229957 locus 86.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_229957 locus 86.00 () Automated name-based View Maps
avgbs_224017 locus 34.70 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_224017 locus 86.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_224017 locus 86.10 () Automated name-based View Maps
avgbs_110090 locus 36.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_110090 locus 86.70 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 avgbs_110090 locus 63.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_110090 locus 86.70 () Automated name-based View Maps
GMI_ES17_c21168_588 locus 36.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES17_c21168_588 locus 85.40 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 GMI_ES17_c21168_588 locus 104.50 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES17_c21168 locus 61.09 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES17_c21168_588 locus 85.40 () Automated name-based View Maps
avgbs_200531 locus 36.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 avgbs_200531 locus 86.70 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_1 avgbs_200531 locus 63.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 avgbs_200531 locus 86.70 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_8 avgbs_200531 locus 36.70 () Automated name-based View Maps
GMI_ES01_c2163_409 locus 36.60 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 GMI_ES01_c2163_409 locus 85.40 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_5 GMI_ES01_c2163_409 locus 54.80 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_6C GMI_ES01_c2163 locus 61.22 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 GMI_ES01_c2163_409 locus 85.40 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 GMI_ES01_c2163_409 locus 102.30 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.