*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-SxH
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-SxH_13
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-SxH [ View Map Set Info ]
Map Name: Oat-2016-SxH_13
Map Start: 0
Map Stop: 44.2
Features by Type:
43 locus
43 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 43.       of 2 | Next
Oat - Oat-2016-SxH - Oat-2016-SxH_13
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES12_c2484_444 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES12_c2484_444 locus 116 () Automated name-based View Maps
avgbs_99178 locus 0 Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP11 avgbs_99178 locus 5.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 avgbs_99178 locus 65.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 avgbs_99178 locus 65.6 () Automated name-based View Maps
avgbs_224856 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_224856 locus 116 () Automated name-based View Maps
avgbs_223490 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_223490 locus 116 () Automated name-based View Maps
GMI_ES14_c8198_614 locus 0 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES14_c8198_614 locus 65.2 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP11 GMI_ES14_c8198_614 locus 5.1 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-5 GMI_ES14_c8198_614 locus 29.11 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES14_c8198_614 locus 65.2 () Automated name-based View Maps
avgbs_15781 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_15781 locus 89.3 () Automated name-based View Maps
avgbs_4770 locus 3.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_4770 locus 116 () Automated name-based View Maps
avgbs_224401 locus 4.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_224401 locus 116 () Automated name-based View Maps
GMI_DS_LB_10329 locus 4.1 Oat - Oat-2017-CORE-Pc - Oat-2017-CORE-Pc-Mrg06 GMI_DS_LB_10329 locus 73.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_DS_LB_10329 locus 73.5 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_3 GMI_DS_LB_10329 locus 46 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-9 GMI_DS_LB_10329 locus 19.49 (cM) Automated name-based View Maps
avgbs_68193 locus 4.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_68193 locus 73.5 () Automated name-based View Maps
avgbs_71544 locus 16.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_71544 locus 70.5 () Automated name-based View Maps
GMI_ES17_c1620_564 locus 16.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES17_c1620_564 locus 59.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES17_c1620_564 locus 59.8 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES17_c1620 locus 71.57 () Automated name-based View Maps
GMI_ES01_c4491_147 locus 20.2 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-5 GMI_ES01_c4491_147 locus 86.2 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES01_c4491_147 locus 83.9 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES01_c4491 locus 73.55 () Automated name-based View Maps
GMI_ES01_c12816_41 locus 20.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES01_c12816_41 locus 83.9 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_17 GMI_ES01_c12816_41 locus 33.83 (cM) Automated name-based View Maps
avgbs_69806 locus 20.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_69806 locus 65.3 () Automated name-based View Maps
avgbs_15073 locus 20.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_15073 locus 84.9 () Automated name-based View Maps
GMI_ES22_c15592_485 locus 24.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES22_c15592_485 locus 72.1 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-5 GMI_ES22_c15592_485 locus 81.87 (cM) Automated name-based View Maps
GMI_ES01_c2878_533 locus 24.4 Oat - Oat-2016-KxO - Oat-2016-KxO_13 GMI_ES01_c2878_533 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES01_c2878_533 locus 72.1 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES01_c2878 locus 73.86 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-5 GMI_ES01_c2878_533 locus 83.66 (cM) Automated name-based View Maps
GMI_ES03_c9382_408 locus 25.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES03_c9382_408 locus 67.6 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-1 GMI_ES03_c9382_408 locus 22.79 (cM) Automated name-based View Maps
avgbs_31418 locus 28.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_31418 locus 72.1 () Automated name-based View Maps
GMI_ES02_c4978_453 locus 28.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES02_c4978_453 locus 72.1 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_13 GMI_ES02_c4978_453 locus 0 () Automated name-based View Maps
GMI_ES17_c2251_283 locus 32.8 Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP11 GMI_ES17_c2251_283 locus 2 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES17_c2251 locus 79.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES17_c2251_283 locus 63.2 () Automated name-based View Maps
GMI_ES17_c7819_617 locus 32.8 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES17_c7819_617 locus 63.2 () Automated name-based View Maps
GMI_ES15_c5405_665 locus 32.8 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES15_c5405_665 locus 63.2 () Automated name-based View Maps
GMI_ES03_c1994_232 locus 32.8 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_ES03_c1994_232 locus 63.2 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP11 GMI_ES03_c1994_232 locus 2 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.