*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-SxH
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-SxH_20
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-SxH [ View Map Set Info ]
Map Name: Oat-2016-SxH_20
Map Start: 0.00
Map Stop: 26.10
Features by Type:
11 locus
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
Oat - Oat-2016-SxH - Oat-2016-SxH_20
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_224979 locus 0.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 avgbs_224979 locus 2.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_224979 locus 2.00 () Automated name-based View Maps
avgbs_56558 locus 0.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 avgbs_56558 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_56558 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_1b avgbs_56558 locus 51.90 () Automated name-based View Maps
GMI_ES01_c2402_390 locus 1.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES01_c2402_390 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_1b GMI_ES01_c2402_390 locus 51.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 GMI_ES01_c2402_390 locus 0.00 () Automated name-based View Maps
GMI_ES_CC4334_304 locus 1.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 GMI_ES_CC4334_304 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES_CC4334_304 locus 0.00 () Automated name-based View Maps
GMI_ES15_c690_324 locus 4.00 Oat - Avena_2013_SNP - Avena_2013_SNP_2C GMI_ES15_c690 locus 5.78 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES15_c690_324 locus 5.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 GMI_ES15_c690_324 locus 5.30 () Automated name-based View Maps
GMI_ES22_c1298_437 locus 4.00 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-32 GMI_ES22_c1298_437 locus 16.89 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 GMI_ES22_c1298_437 locus 3.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES22_c1298_437 locus 3.80 () Automated name-based View Maps
GMI_DS_LB_3936 locus 4.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 GMI_DS_LB_3936 locus 4.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_DS_LB_3936 locus 4.60 () Automated name-based View Maps
avgbs_202772 locus 8.50 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_202772 locus 14.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 avgbs_202772 locus 14.30 () Automated name-based View Maps
avgbs_223859 locus 8.50 Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 avgbs_223859 locus 14.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 avgbs_223859 locus 14.00 () Automated name-based View Maps
avgbs_42405 locus 14.60 No other positions
GMI_ES03_c10410_600 locus 26.10 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_32 GMI_ES03_c10410_600 locus 0.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 GMI_ES03_c10410_600 locus 12.10 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-32 GMI_ES03_c10410_600 locus 5.71 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 GMI_ES03_c10410_600 locus 12.10 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.