*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-SxH
(Reference Set)
Oat-Oat-2016-AxM
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-SxH_9 Oat-2016-AxM_16
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-SxH [ View Map Set Info ]
Map Name: Oat-2016-SxH_9
Map Start: 0.00
Map Stop: 14.00
Features by Type:
44 locus
44 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 44.       of 2 | Next
Oat - Oat-2016-SxH - Oat-2016-SxH_9
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES22_c16302_276 locus 0.00 Oat - Oat-2016-AxM - Oat-2016-AxM_16 GMI_ES22_c16302_276 locus 12.00 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES22_c16302_276 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES22_c16302_276 locus 123.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_21 GMI_ES22_c16302_276 locus 11.89 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES22_c16302_276 locus 123.70 () Automated name-based View Maps
GMI_DS_CC4394_195 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_DS_CC4394_195 locus 123.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_DS_CC4394_195 locus 123.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_21 GMI_DS_CC4394_195 locus 11.89 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_DS_CC4394_195 locus 98.70 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_DS_CC4394_195 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_DS_CC4394_195 locus 96.30 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_DS_CC4394 locus 16.05 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_16 GMI_DS_CC4394_195 locus 12.00 () Automated name-based View Maps
GMI_ES01_c2387_92 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES01_c2387_92 locus 125.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES01_c2387_92 locus 125.80 () Automated name-based View Maps
GMI_ES15_c6252_199 locus 0.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES15_c6252_199 locus 125.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES15_c6252_199 locus 125.80 () Automated name-based View Maps
GMI_ES17_c1779_644 locus 0.00 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES17_c1779 locus 16.49 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES17_c1779_644 locus 126.70 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_ES17_c1779_644 locus 100.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES17_c1779_644 locus 126.70 () Automated name-based View Maps
GMI_ES05_c10300_165 locus 0.00 Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_ES05_c10300_165 locus 96.30 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-44 GMI_ES05_c10300_165 locus 5.73 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES05_c10300_165 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_16 GMI_ES05_c10300_165 locus 12.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_21 GMI_ES05_c10300_165 locus 11.89 (cM) Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES05_c10300_165 locus 5.68 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES05_c10300_165 locus 123.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES05_c10300_165 locus 123.70 () Automated name-based View Maps
GMI_ES05_c15948_428 locus 0.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES05_c15948_428 locus 125.80 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES05_c15948_428 locus 6.28 (cM) Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_21 GMI_ES05_c15948_428 locus 12.20 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES05_c15948_428 locus 125.80 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_ES05_c15948_428 locus 96.30 () Automated name-based View Maps
GMI_GBS_2659 locus 0.00 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_21 GMI_GBS_2659 locus 12.20 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_GBS_2659 locus 140.10 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_GBS_2659 locus 94.90 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13b GMI_GBS_2659 locus 24.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_GBS_2659 locus 140.10 () Automated name-based View Maps
GMI_ES14_c1929_383 locus 3.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES14_c1929_383 locus 140.10 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES14_c1929_383 locus 11.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES14_c1929_383 locus 140.10 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_ES14_c1929_383 locus 94.90 () Automated name-based View Maps
GMI_ES03_c1096_257 locus 3.00 Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_ES03_c1096_257 locus 96.30 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES03_c1096_257 locus 8.97 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES03_c1096_257 locus 130.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES03_c1096_257 locus 130.80 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES03_c1096_257 locus 11.40 () Automated name-based View Maps
GMI_ES15_c7106_329 locus 3.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES15_c7106_329 locus 140.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES15_c7106_329 locus 140.10 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_ES15_c7106_329 locus 94.90 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES15_c7106_329 locus 11.40 () Automated name-based View Maps
GMI_ES05_c20848_84 locus 3.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES05_c20848_84 locus 140.10 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES05_c20848_84 locus 4.41 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES05_c20848_84 locus 140.10 () Automated name-based View Maps
GMI_ES17_c15455_93 locus 3.00 Oat - Oat-2016-PxB - Oat-2016-PxB_20 GMI_ES17_c15455_93 locus 5.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES17_c15455_93 locus 130.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES17_c15455_93 locus 130.80 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_ES17_c15455_93 locus 96.30 () Automated name-based View Maps
GMI_ES01_c13907_104 locus 3.00 Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES01_c13907 locus 19.16 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-4 GMI_ES01_c13907_104 locus 11.75 (cM) Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_12 GMI_ES01_c13907_104 locus 96.30 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES01_c13907_104 locus 11.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES01_c13907_104 locus 130.80 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES01_c13907_104 locus 130.80 () Automated name-based View Maps
GMI_ES17_c968_903 locus 3.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES17_c968_903 locus 140.10 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_16A GMI_ES17_c968 locus 20.61 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES17_c968_903 locus 140.10 () Automated name-based View Maps
GMI_DS_LB_7012 locus 3.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_DS_LB_7012 locus 140.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_DS_LB_7012 locus 140.10 () Automated name-based View Maps
GMI_DS_LB_2849 locus 3.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_DS_LB_2849 locus 140.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_DS_LB_2849 locus 140.10 () Automated name-based View Maps
GMI_ES17_c6884_501 locus 6.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES17_c6884_501 locus 142.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES17_c6884_501 locus 142.00 () Automated name-based View Maps
GMI_ES05_c3954_482 locus 6.00 Oat - Oat-2016-KxO - Oat-2016-KxO_4 GMI_ES05_c3954_482 locus 7.10 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM20 GMI_ES05_c3954_482 locus 11.40 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_16 GMI_ES05_c3954_482 locus 18.30 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-8 GMI_ES05_c3954_482 locus 9.83 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES05_c3954_482 locus 9.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_6b GMI_ES05_c3954_482 locus 25.70 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_21 GMI_ES05_c3954_482 locus 18.90 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES05_c3954_482 locus 142.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES05_c3954_482 locus 142.00 () Automated name-based View Maps
GMI_ES05_c8027_267 locus 6.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES05_c8027_267 locus 142.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES05_c8027_267 locus 142.00 () Automated name-based View Maps
GMI_ES02_c12745_731 locus 6.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES02_c12745_731 locus 142.00 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_9 GMI_ES02_c12745_731 locus 6.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES02_c12745_731 locus 142.00 () Automated name-based View Maps
GMI_GBS_71751 locus 6.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_GBS_71751 locus 142.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_GBS_71751 locus 142.00 () Automated name-based View Maps
GMI_GBS_4508 locus 6.00 Oat - Oat-2016-AxM - Oat-2016-AxM_20b GMI_GBS_4508 locus 1.40 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-5 GMI_GBS_4508 locus 81.68 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_GBS_4508 locus 142.00 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_25 GMI_GBS_4508 locus 1.27 (cM) Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_AM20 GMI_GBS_4508 locus 11.40 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-8 GMI_GBS_4508 locus 11.70 (cM) Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_16c GMI_GBS_4508 locus 0.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_GBS_4508 locus 142.00 () Automated name-based View Maps
GMI_ES02_c12165_458 locus 6.00 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_ES02_c12165_458 locus 142.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_ES02_c12165_458 locus 142.00 () Automated name-based View Maps
GMI_GBS_95938 locus 6.00 Oat - Oat-2016-KxO - Oat-2016-KxO_3 GMI_GBS_95938 locus 125.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 GMI_GBS_95938 locus 142.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 GMI_GBS_95938 locus 142.00 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.