*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2017-CORE-Pc
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2017-CORE-Pc-Mrg18
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2017-CORE-Pc [ View Map Set Info ]
Map Name: Oat-2017-CORE-Pc-Mrg18
Map Start: 21.1
Map Stop: 84
Features by Type:
5 locus
3 qtl
8 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 8 of 8.
Oat - Oat-2017-CORE-Pc - Oat-2017-CORE-Pc-Mrg18
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
QPc.CORE.18.3 qtl 67.7 No other positions
QPc.CORE.18.2 qtl 67.7 No other positions
QPc.CORE.18.1 qtl 21.2 No other positions
avgbs_7964 locus 84 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 avgbs_7964 locus 84 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 avgbs_7964 locus 84 () Automated name-based View Maps
GMI_GBS_24408 locus 67.7 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_GBS_24408 locus 67.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_GBS_24408 locus 67.7 () Automated name-based View Maps
GMI_ES05_c11155_383 locus 67.7 Oat - Oat-2020-UMNF-Pc - Oat-2020-UMNF-Pc_Mrg18 GMI_ES05_c11155_383 locus 67.6 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_ES05_c11155_383 locus 67.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_ES05_c11155_383 locus 67.7 () Automated name-based View Maps
GMI_ES03_c2277_336 locus 67.7 Oat - Oat-2020-UMNF-Pc - Oat-2020-UMNF-Pc_Mrg18 GMI_ES03_c2277_336 locus 67.6 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_18 GMI_ES03_c2277_336 locus 9.7 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_13 GMI_ES03_c2277_336 locus 4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_ES03_c2277_336 locus 67.7 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_22 GMI_ES03_c2277_336 locus 9.63 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_ES03_c2277_336 locus 67.7 () Automated name-based View Maps
GMI_DS_LB_2908 locus 21.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 GMI_DS_LB_2908 locus 21.1 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_8 GMI_DS_LB_2908 locus 20.47 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 GMI_DS_LB_2908 locus 21.1 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_3 GMI_DS_LB_2908 locus 21.8 () Automated name-based View Maps
Oat - Oat-2020-UMNF-Pc - Oat-2020-UMNF-Pc_Mrg18 GMI_DS_LB_2908 locus 21.1 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.