*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2017-U01BxU006
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2017-U01BxU006-23
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2017-U01BxU006 [ View Map Set Info ]
Map Name: Oat-2017-U01BxU006-23
Map Start: 0 cM
Map Stop: 39.65 cM
Features by Type:
14 locus
14 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 14 of 14.
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-23
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GMI_ES05_c1138_484 locus 0 Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP23 GMI_ES05_c1138_484 locus 1.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES05_c1138_484 locus 2 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_14b GMI_ES05_c1138_484 locus 28.3 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_8 GMI_ES05_c1138_484 locus 0.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES05_c1138_484 locus 2 () Automated name-based View Maps
GMI_ES14_c15338_376 locus 0.62 Oat - Oat-2016-OxT - Oat-2016-OxT_14b GMI_ES14_c15338_376 locus 24 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_6 GMI_ES14_c15338_376 locus 54.9 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_8 GMI_ES14_c15338_376 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES14_c15338_376 locus 4.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES14_c15338_376 locus 4.9 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-30 GMI_ES14_c15338_376 locus 5.21 (cM) Automated name-based View Maps
GMI_ES17_c18602_497 locus 12.02 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-30 GMI_ES17_c18602_497 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_8 GMI_ES17_c18602_497 locus 2.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES17_c18602_497 locus 8.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES17_c18602_497 locus 8.1 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_6 GMI_ES17_c18602_497 locus 42.6 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_14b GMI_ES17_c18602_497 locus 20.6 () Automated name-based View Maps
GMI_ES14_c11245_392 locus 13.24 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES14_c11245_392 locus 8.1 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_14b GMI_ES14_c11245_392 locus 20.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES14_c11245_392 locus 8.1 () Automated name-based View Maps
GMI_GBS_2049 locus 13.24 Oat - Oat-2016-OxT - Oat-2016-OxT_14b GMI_GBS_2049 locus 20.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_GBS_2049 locus 8.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_GBS_2049 locus 8.1 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-30 GMI_GBS_2049 locus 1.31 (cM) Automated name-based View Maps
ES22_lrc15031_170 locus 19.67 No other positions
GMI_ES05_c8792_292 locus 23.35 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES05_c8792_292 locus 19.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES05_c8792_292 locus 19.4 () Automated name-based View Maps
GMI_ES14_c18247_456 locus 26.52 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES14_c18247_456 locus 23.5 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_1 GMI_ES14_c18247_456 locus 5.4 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP23 GMI_ES14_c18247_456 locus 29 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_6 GMI_ES14_c18247_456 locus 30.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES14_c18247_456 locus 23.5 () Automated name-based View Maps
GMI_ES02_c16427_394 locus 31.82 Oat - Oat-2016-IL5 - Oat-2016-IL5_WB7 GMI_ES02_c16427_394 locus 36.5 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_12 GMI_ES02_c16427_394 locus 25.3 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_1 GMI_ES02_c16427_394 locus 1.2 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP23 GMI_ES02_c16427_394 locus 24.7 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_6 GMI_ES02_c16427_394 locus 35.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES02_c16427_394 locus 19.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES02_c16427_394 locus 19.4 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_8 GMI_ES02_c16427_394 locus 9.6 () Automated name-based View Maps
GMI_ES14_c11797_371 locus 32.78 Oat - Oat-2016-OxP - Oat-2016-OxP_8 GMI_ES14_c11797_371 locus 9.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES14_c11797_371 locus 20 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_12 GMI_ES14_c11797_371 locus 31.8 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_1 GMI_ES14_c11797_371 locus 3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES14_c11797_371 locus 20 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_6 GMI_ES14_c11797_371 locus 34 () Automated name-based View Maps
GMI_ES14_c1981_351 locus 33.68 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES14_c1981_351 locus 21.7 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_WB7 GMI_ES14_c1981_351 locus 34.3 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_12 GMI_ES14_c1981_351 locus 31.8 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_31 GMI_ES14_c1981_351 locus 17.7 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_6 GMI_ES14_c1981_351 locus 33.3 () Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg24 GMI_ES14_c1981_351 locus 21.7 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES14_c1981_351 locus 21.7 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_1 GMI_ES14_c1981_351 locus 4.2 () Automated name-based View Maps
ES02_lrc23486_262 locus 36.83 No other positions
GMI_ES02_c15926_519 locus 38.26 Oat - Oat-2016-IL5 - Oat-2016-IL5_WB7 GMI_ES02_c15926_519 locus 36.5 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP23 GMI_ES02_c15926_519 locus 24.7 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_8A GMI_ES02_c15926 locus 61.65 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_8 GMI_ES02_c15926_519 locus 9.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES02_c15926_519 locus 19.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES02_c15926_519 locus 19.4 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_1 GMI_ES02_c15926_519 locus 3 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_14a GMI_ES02_c15926_519 locus 117.6 () Automated name-based View Maps
GMI_ES21_c3759_499 locus 39.65 Oat - Oat-2016-OxP - Oat-2016-OxP_8 GMI_ES21_c3759_499 locus 9.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES21_c3759_499 locus 19.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES21_c3759_499 locus 19.4 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.