*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2017-UTauxU017
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2017-UTauxU017-10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2017-UTauxU017 [ View Map Set Info ]
Map Name: Oat-2017-UTauxU017-10
Map Start: 0 cM
Map Stop: 64.79 cM
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-10
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GMI_ES_LB_11625 locus 0 Oat - Oat-2016-IL4 - Oat-2016-IL4_21 GMI_ES_LB_11625 locus 11 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES_LB_11625 locus 0 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_20 GMI_ES_LB_11625 locus 0 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES_LB_11625 locus 89.31 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES_LB_11625 locus 0 () Automated name-based View Maps
Oat - Oat-2020-CORE-SV - Oat-2020-CORE-SV_Mrg02 GMI_ES_LB_11625 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-39 GMI_ES_LB_11625 locus 6.05 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_27b GMI_ES_LB_11625 locus 25.8 () Automated name-based View Maps
GMI_ES05_c5613_127 locus 0.91 Oat - Oat-2016-BxG - Oat-2016-BxG_4b GMI_ES05_c5613_127 locus 0 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES05_c5613_127 locus 89.31 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_26 GMI_ES05_c5613_127 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES05_c5613_127 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES05_c5613_127 locus 0 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_21 GMI_ES05_c5613_127 locus 11 () Automated name-based View Maps
GMI_GBS_52916 locus 5.01 No other positions
GMI_ES_CC3737_371 locus 7.92 Oat - Avena_2013_SNP - Avena_2013_SNP_13A GMI_ES_CC3737 locus 95.49 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg12 GMI_ES_CC3737_371 locus 29.5 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_13 GMI_ES_CC3737_371 locus 9.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES_CC3737_371 locus 29.5 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_10a GMI_ES_CC3737_371 locus 0 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_16 GMI_ES_CC3737_371 locus 8.84 (cM) Automated name-based View Maps
GMI_ES14_c53_424 locus 9.56 Oat - Oat-2016-PxB - Oat-2016-PxB_26 GMI_ES14_c53_424 locus 2.2 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_ES14_c53_424 locus 14.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES14_c53_424 locus 4.5 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_4b GMI_ES14_c53_424 locus 4.4 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4 GMI_ES14_c53_424 locus 4.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES14_c53_424 locus 4.5 () Automated name-based View Maps
GMI_ES15_c3333_509 locus 12.19 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES15_c3333_509 locus 3.5 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_26 GMI_ES15_c3333_509 locus 1.1 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4 GMI_ES15_c3333_509 locus 3.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES15_c3333_509 locus 3.5 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-39 GMI_ES15_c3333_509 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_ES15_c3333_509 locus 14.8 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES15_c3333_509 locus 88.06 (cM) Automated name-based View Maps
GMI_DS_LB_6614 locus 15.65 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_DS_LB_6614 locus 10.8 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_DS_LB_6614 locus 0 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_DS_LB_6614 locus 88.06 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_DS_LB_6614 locus 10.8 () Automated name-based View Maps
GMI_ES17_c19068_531 locus 16.98 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_ES17_c19068_531 locus 88.37 (cM) Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_20 GMI_ES17_c19068_531 locus 7.6 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D GMI_ES17_c19068 locus 90.96 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES17_c19068_531 locus 7.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES17_c19068_531 locus 7.9 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES17_c19068_531 locus 35.9 () Automated name-based View Maps
GMI_GBS_29651 locus 24.06 Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_GBS_29651 locus 2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_29651 locus 23.2 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_20 GMI_GBS_29651 locus 18.7 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4 GMI_GBS_29651 locus 27.1 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_GBS_29651 locus 78.9 (cM) Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_GBS_29651 locus 9.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_29651 locus 23.2 () Automated name-based View Maps
GMI_GBS_22030 locus 25.28 Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4 GMI_GBS_22030 locus 29.6 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_5a GMI_GBS_22030 locus 13 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_22030 locus 27.4 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_GBS_22030 locus 75.31 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_GBS_22030 locus 3 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-1 GMI_GBS_22030 locus 73.55 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_22030 locus 27.4 () Automated name-based View Maps
GMI_GBS_85630 locus 29.74 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_85630 locus 23.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_85630 locus 23.2 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_GBS_85630 locus 2 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4 GMI_GBS_85630 locus 27.1 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_10 GMI_GBS_85630 locus 79.21 (cM) Automated name-based View Maps
GMI_DS_LB_7722 locus 30.93 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-1 GMI_DS_LB_7722 locus 67.55 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_DS_LB_7722 locus 30.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_DS_LB_7722 locus 30.1 () Automated name-based View Maps
GMI_ES01_c11287_335 locus 35.75 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c11287_335 locus 30.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES01_c11287_335 locus 30.1 () Automated name-based View Maps
Oat - Oat-2013-SNP-SxH - Oat-2013-SNP-SxH-16 GMI_ES01_c11287 locus 11.8 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-1 GMI_ES01_c11287_335 locus 73.02 (cM) Automated name-based View Maps
GMI_ES_LB_11316 locus 40.27 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES_LB_11316 locus 34.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES_LB_11316 locus 34.1 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-1 GMI_ES_LB_11316 locus 81.42 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES_LB_11316 locus 6.9 () Automated name-based View Maps
GMI_ES22_c11850_175 locus 57.41 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_36 GMI_ES22_c11850_175 locus 0.31 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES22_c11850_175 locus 107.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES22_c11850_175 locus 107.5 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a GMI_ES22_c11850_175 locus 9.9 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 GMI_ES22_c11850_175 locus 58.4 () Automated name-based View Maps
GMI_ES22_c9420_270 locus 61.06 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_ES22_c9420_270 locus 87.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES22_c9420_270 locus 87.3 () Automated name-based View Maps
GMI_GBS_24062 locus 64.79 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_GBS_24062 locus 87.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 GMI_GBS_24062 locus 87.3 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.