*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2017-UTauxU017
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2017-UTauxU017-8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2017-UTauxU017 [ View Map Set Info ]
Map Name: Oat-2017-UTauxU017-8
Map Start: 0.00 cM
Map Stop: 28.16 cM
Features by Type:
20 locus
20 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 20 of 20.
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-8
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GMI_ES15_c5429_117 locus 0.00 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_25 GMI_ES15_c5429_117 locus 9.74 (cM) Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES15_c5429_117 locus 18.50 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_14 GMI_ES15_c5429_117 locus 88.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES15_c5429_117 locus 193.60 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_3 GMI_ES15_c5429_117 locus 97.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES15_c5429_117 locus 193.60 () Automated name-based View Maps
GMI_ES05_c83_464 locus 1.43 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES05_c83_464 locus 193.60 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_3 GMI_ES05_c83_464 locus 97.50 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_25 GMI_ES05_c83_464 locus 9.74 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES05_c83_464 locus 193.60 () Automated name-based View Maps
GMI_DS_LB_850 locus 1.51 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_25 GMI_DS_LB_850 locus 9.74 (cM) Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_3 GMI_DS_LB_850 locus 97.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_DS_LB_850 locus 193.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_DS_LB_850 locus 193.60 () Automated name-based View Maps
GMI_DS_CC11093_89 locus 5.25 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_DS_CC11093_89 locus 196.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_DS_CC11093_89 locus 196.30 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_19A GMI_DS_CC11093 locus 75.19 () Automated name-based View Maps
GMI_GBS_115266 locus 5.59 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_GBS_115266 locus 195.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_GBS_115266 locus 195.60 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_3 GMI_GBS_115266 locus 93.20 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_14 GMI_GBS_115266 locus 91.40 () Automated name-based View Maps
GMI_ES01_c25884_181 locus 7.02 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES01_c25884_181 locus 196.30 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_25 GMI_ES01_c25884_181 locus 10.37 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES01_c25884_181 locus 196.30 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES01_c25884_181 locus 21.30 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_19A GMI_ES01_c25884 locus 73.48 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_20b GMI_ES01_c25884_181 locus 10.80 () Automated name-based View Maps
GMI_ES03_c1313_290 locus 8.62 Oat - Oat-2016-PxG - Oat-2016-PxG_3 GMI_ES03_c1313_290 locus 89.90 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_14 GMI_ES03_c1313_290 locus 95.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES03_c1313_290 locus 196.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES03_c1313_290 locus 196.30 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_25 GMI_ES03_c1313_290 locus 11.94 (cM) Automated name-based View Maps
GMI_ES02_c4352_145 locus 11.26 Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES02_c4352_145 locus 26.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES02_c4352_145 locus 202.60 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_19A GMI_ES02_c4352 locus 75.83 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES02_c4352_145 locus 202.60 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_25 GMI_ES02_c4352_145 locus 11.94 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_14 GMI_ES02_c4352_145 locus 96.20 () Automated name-based View Maps
GMI_ES_LB_5379 locus 11.56 Oat - Oat-2016-PxB - Oat-2016-PxB_14 GMI_ES_LB_5379 locus 96.20 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES_LB_5379 locus 26.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES_LB_5379 locus 202.60 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_25 GMI_ES_LB_5379 locus 11.94 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES_LB_5379 locus 202.60 () Automated name-based View Maps
GMI_ES03_c4612_431 locus 12.44 Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_25 GMI_ES03_c4612_431 locus 11.94 (cM) Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_14 GMI_ES03_c4612_431 locus 96.20 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES03_c4612_431 locus 26.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES03_c4612_431 locus 202.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES03_c4612_431 locus 202.60 () Automated name-based View Maps
ES02_lrc13785_433 locus 13.92 No other positions
GMI_ES14_c8709_65 locus 14.50 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES14_c8709_65 locus 218.30 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES14_c8709_65 locus 31.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES14_c8709_65 locus 218.30 () Automated name-based View Maps
GMI_ES02_c6122_167 locus 17.37 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES02_c6122_167 locus 208.80 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ksh1 GMI_ES02_c6122_167 locus 43.40 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_16b GMI_ES02_c6122_167 locus 43.60 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 GMI_ES02_c6122_167 locus 270.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES02_c6122_167 locus 208.80 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_19A GMI_ES02_c6122 locus 84.48 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_3 GMI_ES02_c6122_167 locus 55.10 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES02_c6122_167 locus 39.80 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_14 GMI_ES02_c6122_167 locus 103.80 () Automated name-based View Maps
GMI_ES05_c9412_222 locus 20.07 Oat - Oat-2016-SxH - Oat-2016-SxH_6 GMI_ES05_c9412_222 locus 8.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES05_c9412_222 locus 226.60 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES05_c9412_222 locus 44.20 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_16b GMI_ES05_c9412_222 locus 32.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES05_c9412_222 locus 226.60 () Automated name-based View Maps
GMI_GBS_90477 locus 20.13 Oat - Oat-2016-OxP - Oat-2016-OxP_16b GMI_GBS_90477 locus 39.20 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_19a GMI_GBS_90477 locus 9.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_GBS_90477 locus 222.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_GBS_90477 locus 222.00 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 GMI_GBS_90477 locus 280.80 () Automated name-based View Maps
GMI_ES01_c677_223 locus 20.87 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES01_c677_223 locus 226.60 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_25 GMI_ES01_c677_223 locus 18.64 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES01_c677_223 locus 226.60 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES01_c677_223 locus 44.20 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_6 GMI_ES01_c677_223 locus 8.10 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_14 GMI_ES01_c677_223 locus 105.60 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_20b GMI_ES01_c677_223 locus 20.20 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_19A GMI_ES01_c677 locus 97.54 () Automated name-based View Maps
GMI_ES17_c10189_970 locus 21.67 Oat - Oat-2016-SxH - Oat-2016-SxH_6 GMI_ES17_c10189_970 locus 8.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES17_c10189_970 locus 226.60 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES17_c10189_970 locus 44.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES17_c10189_970 locus 226.60 () Automated name-based View Maps
GMI_ES05_c16739_323 locus 22.59 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES05_c16739_323 locus 226.60 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_13a GMI_ES05_c16739_323 locus 44.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES05_c16739_323 locus 226.60 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_6 GMI_ES05_c16739_323 locus 8.10 () Automated name-based View Maps
GMI_ES_LB_8506 locus 23.97 Oat - Oat-2016-SxH - Oat-2016-SxH_6 GMI_ES_LB_8506 locus 8.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES_LB_8506 locus 226.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES_LB_8506 locus 226.60 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-14 GMI_ES_LB_8506 locus 21.75 (cM) Automated name-based View Maps
GMI_ES03_c20602_159 locus 28.16 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-14 GMI_ES03_c20602_159 locus 28.75 (cM) Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS26 GMI_ES03_c20602_159 locus 1.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 GMI_ES03_c20602_159 locus 232.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 GMI_ES03_c20602_159 locus 232.10 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.