*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2018-Consensus
(Reference Set)
Oat-Oat-2016-Consensus
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2018-Consensus_Mrg02 Oat-2016-Consensus-2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2018-Consensus [ View Map Set Info ]
Map Name: Oat-2018-Consensus_Mrg02
Map Start: -26.80
Map Stop: 134.10
Features by Type:
5,252 locus
5,252 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 5,252.       of 211 | Next
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_46471 locus -26.80 No other positions
avgbs_3074 locus -4.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_3074 locus -4.90 () Automated name-based View Maps
avgbs_79443 locus -2.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_79443 locus -2.80 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_27b avgbs_79443 locus 27.60 () Automated name-based View Maps
avgbs_231509 locus -2.10 Oat - Oat-2016-PxG - Oat-2016-PxG_27b avgbs_231509 locus 27.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_231509 locus -2.10 () Automated name-based View Maps
avgbs2_137062.1 locus -1.90 No other positions
avgbs2_137062.1.21 locus -1.90 No other positions
avgbs2_137062.1.35 locus -1.90 No other positions
avgbs2_137062.1.44 locus -1.90 No other positions
avgbs_200828 locus -0.30 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_200828 locus -0.30 () Automated name-based View Maps
avgbs_cluster_27738.1 locus -0.20 No other positions
avgbs_cluster_27738.1.43 locus -0.20 No other positions
avgbs_cluster_27738.1.49 locus -0.20 No other positions
avgbs_cluster_27738.1.57 locus -0.20 No other positions
GMI_ES01_c11620_201 locus 0.40 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-39 GMI_ES01_c11620_201 locus 2.50 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_SW15 GMI_ES01_c11620_201 locus 14.80 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_27b GMI_ES01_c11620_201 locus 23.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES01_c11620_201 locus 0.40 () Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_21 GMI_ES01_c11620_201 locus 16.00 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS4 GMI_ES01_c11620_201 locus 0.00 () Automated name-based View Maps
avgbs_220846 locus 0.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_220846 locus 0.60 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_20 avgbs_220846 locus 0.60 () Automated name-based View Maps
avgbs_79246 locus 1.30 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_79246 locus 1.30 () Automated name-based View Maps
avgbs_118675 locus 2.00 Oat - Oat-2016-DxE - Oat-2016-DxE_7 avgbs_118675 locus 41.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 avgbs_118675 locus 2.00 () Automated name-based View Maps
avgbs_cluster_18753.1 locus 2.00 No other positions
avgbs_cluster_18753.1.8 locus 2.00 No other positions
avgbs_cluster_38666.1 locus 2.00 No other positions
avgbs_cluster_38666.1.20 locus 2.00 No other positions
avgbs2_89329.1 locus 2.00 No other positions
avgbs2_89329.1.8 locus 2.00 No other positions
GMI_ES03_c649_134 locus 2.70 Oat - Oat-2016-DxE - Oat-2016-DxE_7 GMI_ES03_c649_134 locus 41.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 GMI_ES03_c649_134 locus 2.70 () Automated name-based View Maps
Oat - Oat-2016-OxP - Oat-2016-OxP_20 GMI_ES03_c649_134 locus 2.60 () Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_4b GMI_ES03_c649_134 locus 2.20 () Automated name-based View Maps
avgbs_cluster_20569.1 locus 3.50 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.