*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2018-Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2018-Consensus_Mrg03
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2018-Consensus [ View Map Set Info ]
Map Name: Oat-2018-Consensus_Mrg03
Map Start: -0.3
Map Stop: 167.8
Features by Type:
6,585 locus
6,585 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 6,581.       of 264 | Next
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_cluster_4319.1 locus 3.3 No other positions
avgbs_cluster_4319.1.38 locus 3.3 No other positions
avgbs_cluster_8007.1 locus 3.3 No other positions
avgbs_cluster_37338.1 locus 0.2 Oat - Oat-2020-CORE-SV - Oat-2020-CORE-SV_Mrg03 avgbs_cluster_37338.1 locus 0 (cM) Automated name-based View Maps
avgbs_cluster_37338.1.28 locus 0.2 Oat - Oat-2020-CORE-SV - Oat-2020-CORE-SV_Mrg03 avgbs_cluster_37338.1 locus 0 (cM) Automated name-based View Maps
avgbs_115858.1 locus 0.4 No other positions
avgbs_115858.1.29 locus 0.4 No other positions
avgbs_12201 locus 0.5 Oat - Oat-2016-KxO - Oat-2016-KxO_38 avgbs_12201 locus 6.8 () Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg03 avgbs_12201 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 avgbs_12201 locus 0.5 () Automated name-based View Maps
avgbs_cluster_21162.1 locus 0.9 No other positions
avgbs_cluster_21162.1.11 locus 0.9 No other positions
avgbs2_99958.1 locus 0.9 No other positions
avgbs2_99958.1.11 locus 0.9 No other positions
avgbs_15602 locus 1.9 Oat - Oat-2016-KxO - Oat-2016-KxO_38 avgbs_15602 locus 9.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 avgbs_15602 locus 1.9 () Automated name-based View Maps
avgbs_108395 locus 2.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 avgbs_108395 locus 2.2 () Automated name-based View Maps
avgbs_45292 locus 2.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 avgbs_45292 locus 2.2 () Automated name-based View Maps
avgbs_9222 locus 2.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 avgbs_9222 locus 2.2 () Automated name-based View Maps
avgbs_9222.1 locus 2.2 No other positions
avgbs_9222.1.13 locus 2.2 No other positions
avgbs_428230 locus 2.3 No other positions
avgbs2_55242.1 locus 3.2 No other positions
avgbs2_55242.1.28 locus 3.2 No other positions
avgbs2_55242.1.46 locus 3.2 No other positions
BS00036144_51 locus 3.3 Wheat ABD - Wheat_2014_90KSNP - Wheat_2014_90KSNP_7A IWB8042 locus 35.31 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM30-Berkut-x-PI278297 - Wheat-2018-NAM30-BxPI278297_7A BS00036144_51 locus 240.2 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM15-Berkut-x-CItr7635 - Wheat-2018-NAM15-BxCItr7635_7A BS00036144_51 locus 1.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM13-Berkut-x-PI262611 - Wheat-2018-NAM13-BxPI262611_7A BS00036144_51 locus 1.4 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_30 BS00036144_51 locus 0 (cM) Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM10-Berkut-x-PI9791 - Wheat-2018-NAM10-BxPI9791_7A BS00036144_51 locus 0.7 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM11-Berkut-x-CItr4175 - Wheat-2018-NAM11-BxCItr4175_7A BS00036144_51 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM23-Berkut-x-PI192001 - Wheat-2018-NAM23-BxPI192001_7A BS00036144_51 locus 2.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM2-Berkut-x-PI572692 - Wheat-2018-NAM2-BxPI572692_7A BS00036144_51 locus 1.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM9-Berkut-x-Vida - Wheat-2018-NAM9-BxVida_7A BS00036144_51 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM6-Berkut-x-PI470817 - Wheat-2018-NAM6-BxPI470817_7A BS00036144_51 locus 1.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM29-Berkut-x-PI220431 - Wheat-2018-NAM29-BxPI220431_7A BS00036144_51 locus 2.1 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM3-Berkut-x-PI283147 - Wheat-2018-NAM3-BxPI283147_7A BS00036144_51 locus 1.4 () Automated name-based View Maps
Wheat ABD - Wheat-2018-NAM26-Berkut-x-PI185715 - Wheat-2018-NAM26-BxPI185715_7A BS00036144_51 locus 1.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 BS00036144_51 locus 3.3 () Automated name-based View Maps
CDO216B locus 3.3 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_20 cdo216b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 CDO216B locus 3.3 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-20 cdo216b locus 0 () Automated name-based View Maps
GMI_ES01_c14622_328 locus 3.3 Oat - Oat-2016-DxE - Oat-2016-DxE_9b GMI_ES01_c14622_328 locus 69.2 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-29 GMI_ES01_c14622_328 locus 22.33 (cM) Automated name-based View Maps
Oat - Oat-2016-IL4 - Oat-2016-IL4_19 GMI_ES01_c14622_328 locus 9.8 () Automated name-based View Maps
Oat - Oat-2016-AxM - Oat-2016-AxM_26 GMI_ES01_c14622_328 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 GMI_ES01_c14622_328 locus 3.3 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_38 GMI_ES01_c14622_328 locus 6.8 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS24 GMI_ES01_c14622_328 locus 0 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ksh14 GMI_ES01_c14622_328 locus 0 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_4b GMI_ES01_c14622_328 locus 148.9 () Automated name-based View Maps
Oat - Oat-2014-CrownRust - Oat-2014-AsbxMN_30 GMI_ES01_c14622_328 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-BxG - Oat-2016-BxG_33 GMI_ES01_c14622_328 locus 1.4 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.