*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2018-Consensus
(Reference Set) 		Oat-Oat-2016-OxT
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2018-Consensus_Mrg05 Oat-2016-OxT_3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2018-Consensus [ View Map Set Info ]
Map Name: Oat-2018-Consensus_Mrg05
Map Start: -17.30
Map Stop: 175.30
Features by Type:
4,127 locus
4,127 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 4,127.       of 166 | Next
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_428171 locus -17.30 No other positions
avgbs_cluster_38933.1.20 locus -10.60 No other positions
avgbs_cluster_38933.1.21 locus -10.60 No other positions
avgbs_cluster_38933.1.52 locus -10.60 No other positions
avgbs_33375.1 locus 0.60 No other positions
avgbs_33375.1.14 locus 0.60 No other positions
avgbs_6873 locus 1.10 Oat - Oat-2016-PxG - Oat-2016-PxG_6a avgbs_6873 locus 1.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_6873 locus 1.10 () Automated name-based View Maps
avgbs_cluster_27303.1 locus 1.10 No other positions
avgbs_cluster_27303.1.36 locus 1.10 No other positions
GMI_ES17_c7320_909 locus 1.10 Oat - Oat-2016-OxT - Oat-2016-OxT_3 GMI_ES17_c7320_909 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_6a GMI_ES17_c7320_909 locus 1.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 GMI_ES17_c7320_909 locus 1.10 () Automated name-based View Maps
avgbs2_52563.1 locus 2.80 No other positions
avgbs2_52563.1.56 locus 2.80 No other positions
avgbs2_52563.1.62 locus 2.80 No other positions
avgbs_74127 locus 4.10 Oat - Oat-2016-OxT - Oat-2016-OxT_3 avgbs_74127 locus 3.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_74127 locus 4.10 () Automated name-based View Maps
avgbs_6K_83744 locus 4.80 Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 avgbs_6K_83744 locus 4.80 () Automated name-based View Maps
avgbs_222892.1 locus 4.90 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs_222892.1 locus 242.00 (cM) Automated name-based View Maps
avgbs_222892.1.62 locus 4.90 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs_222892.1 locus 242.00 (cM) Automated name-based View Maps
avgbs_cluster_4524.1 locus 5.60 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs_cluster_4524.1 locus 241.00 (cM) Automated name-based View Maps
avgbs_cluster_4524.1.10 locus 5.60 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs_cluster_4524.1 locus 241.00 (cM) Automated name-based View Maps
avgbs_204284.1 locus 6.10 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs_204284.1 locus 241.00 (cM) Automated name-based View Maps
avgbs_204284.1.23 locus 6.10 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs_204284.1 locus 241.00 (cM) Automated name-based View Maps
avgbs_cluster_793.1 locus 6.10 No other positions
avgbs_cluster_793.1.36 locus 6.10 No other positions
avgbs_cluster_793.1.57 locus 6.10 No other positions
avgbs_84537.1 locus 6.50 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs_84537.1 locus 241.00 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.