*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2018-Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2018-Consensus_Mrg08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2018-Consensus [ View Map Set Info ]
Map Name: Oat-2018-Consensus_Mrg08
Map Start: 0
Map Stop: 203.7
Features by Type:
4,660 locus
4,660 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 4,660.       Previous | of 187 | Next
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs2_24741.1.21 locus 183.3 No other positions
avgbs2_24741.1 locus 183.3 No other positions
GMI_ES05_c6484_728 locus 182.3 Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2a GMI_ES05_c6484_728 locus 0 () Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-41 GMI_ES05_c6484_728 locus 1.49 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_16 GMI_ES05_c6484_728 locus 4.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES05_c6484_728 locus 182.3 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS21 GMI_ES05_c6484_728 locus 1.2 () Automated name-based View Maps
GMI_ES05_c20767_315 locus 182.3 Oat - Oat-2016-OxT - Oat-2016-OxT_16 GMI_ES05_c20767_315 locus 4.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES05_c20767_315 locus 182.3 () Automated name-based View Maps
GMI_ES01_c7523_442 locus 182.3 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES01_c7523_442 locus 182.3 () Automated name-based View Maps
GMI_DS_oPt-18064_151 locus 182.3 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-41 GMI_DS_oPt-18064_151 locus 2.37 (cM) Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS21 GMI_DS_oPt-18064_151 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Pc53 - Oat-2018-Pc53xOt_Mrg08 GMI_DS_oPt-18064_151 locus 40.7 (cM) Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_12D GMI_DS_oPt-18064 locus 133.07 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_DS_oPt-18064_151 locus 182.3 () Automated name-based View Maps
avgbs2_193013.1.60 locus 182.3 No other positions
avgbs2_193013.1.51 locus 182.3 No other positions
avgbs2_193013.1 locus 182.3 No other positions
avgbs2_130067.1.55 locus 182.3 No other positions
avgbs2_130067.1 locus 182.3 No other positions
avgbs_cluster_35352.1.12 locus 182.3 No other positions
avgbs_cluster_35352.1 locus 182.3 No other positions
avgbs_cluster_35163.1.37 locus 182.3 No other positions
avgbs_cluster_35163.1.33 locus 182.3 No other positions
avgbs_cluster_35163.1 locus 182.3 No other positions
avgbs_cluster_33523.1.25 locus 182.3 No other positions
avgbs_cluster_33523.1 locus 182.3 No other positions
avgbs_cluster_28574.1.27 locus 182.3 No other positions
avgbs_cluster_28574.1 locus 182.3 No other positions
avgbs_cluster_23766.1.35 locus 182.3 No other positions
avgbs_cluster_23766.1 locus 182.3 No other positions
avgbs_87180 locus 182.3 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_87180 locus 182.3 () Automated name-based View Maps
avgbs_72823 locus 182.3 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_72823 locus 182.3 () Automated name-based View Maps
avgbs_6212.1.6 locus 182.3 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.