*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2018-Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2018-Consensus_Mrg08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2018-Consensus [ View Map Set Info ]
Map Name: Oat-2018-Consensus_Mrg08
Map Start: 0
Map Stop: 203.7
Features by Type:
4,660 locus
4,660 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 4,660.       of 187 | Next
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_ES15_c3872_341 locus 0 Oat - Oat-2016-NSGC - Oat-2016-NSGC_Mrg08 GMI_ES15_c3872_341 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_ES15_c3872_341 locus 114.5 () Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg08 GMI_ES15_c3872_341 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES15_c3872_341 locus 0 () Automated name-based View Maps
GMI_DS_oPt-16541_253 locus 0 Oat - Oat-2016-HxZ - Oat-2016-HxZ_MP2b GMI_DS_oPt-16541_253 locus 114.5 () Automated name-based View Maps
Oat - Oat-2013-SNP-PxG - Oat-2013-SNP-PxG-4 GMI_DS_oPt-16541 locus 129 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_DS_oPt-16541_253 locus 0 () Automated name-based View Maps
Oat - Oat-2020-CORE-SV - Oat-2020-CORE-SV_Mrg08 GMI_DS_oPt-16541_253 locus 0 (cM) Automated name-based View Maps
avgbs_44816.1.38 locus 0 No other positions
avgbs_44816.1 locus 0 No other positions
avgbs_206726.1.42 locus 203.7 No other positions
avgbs_206726.1 locus 203.7 No other positions
avgbs_38507.1.13 locus 197.1 No other positions
avgbs_38507.1 locus 197.1 No other positions
avgbs_206726 locus 195.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_206726 locus 195.2 () Automated name-based View Maps
Oat - Oat-2017-CORE-Pc - Oat-2017-CORE-Pc-Mrg08 avgbs_206726 locus 195.2 () Automated name-based View Maps
Oat - Oat-2016-NSGC - Oat-2016-NSGC_Mrg08 avgbs_206726 locus 195.2 (cM) Automated name-based View Maps
avgbs_cluster_39769.1.30 locus 193.4 No other positions
avgbs_cluster_39769.1 locus 193.4 No other positions
avgbs_cluster_39769.1.34 locus 193.3 No other positions
avgbs2_22169.1.28 locus 192.8 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg08 avgbs2_22169.1 locus 128.7 (cM) Automated name-based View Maps
avgbs2_22169.1 locus 192.8 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg08 avgbs2_22169.1 locus 128.7 (cM) Automated name-based View Maps
avgbs_cluster_13606.1.14 locus 192.8 No other positions
avgbs_cluster_13606.1 locus 192.8 No other positions
avgbs_21544 locus 192.8 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_21544 locus 192.8 () Automated name-based View Maps
avgbs_11924.1.28 locus 192.8 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg08 avgbs_11924.1 locus 128.7 (cM) Automated name-based View Maps
avgbs_11924.1 locus 192.8 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg08 avgbs_11924.1 locus 128.7 (cM) Automated name-based View Maps
avgbs_108248 locus 188.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_108248 locus 188.5 () Automated name-based View Maps
avgbs_6K_77809 locus 188.3 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_6K_77809 locus 188.3 () Automated name-based View Maps
avgbs_6212 locus 188.3 Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 avgbs_6212 locus 188.3 () Automated name-based View Maps
GMI_ES03_lrc22399_424 locus 186.4 Oat - Oat-2016-OxP - Oat-2016-OxP_18 GMI_ES03_lrc22399_424 locus 0 () Automated name-based View Maps
Oat - Oat-2016-IL5 - Oat-2016-IL5_SS21 GMI_ES03_lrc22399_424 locus 6 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_16 GMI_ES03_lrc22399_424 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 GMI_ES03_lrc22399_424 locus 186.4 () Automated name-based View Maps
avgbs_cluster_81.1.55 locus 184.4 No other positions
avgbs_cluster_81.1 locus 184.4 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.