*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2018-Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2018-Consensus_Mrg12
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2018-Consensus [ View Map Set Info ]
Map Name: Oat-2018-Consensus_Mrg12
Map Start: -10.2
Map Stop: 125.5
Features by Type:
5,070 locus
5,070 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 5,070.       of 203 | Next
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg12
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
UMN295A locus 0 Oat - Oat-2020-UFRGS-Bg - Oat-2020-UFRGS-Bg_Mrg12 UMN295A locus 0 (cM) Automated name-based View Maps
Oat - Oat-2020-UMNF-Pc - Oat-2020-UMNF-Pc_Mrg12 UMN295A locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 UMN295A locus 0 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_6 UMN295A locus 0 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_6 UMN295A locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_5 UMN295A locus 140.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_6 UMN295A locus 95 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-6 umn295a locus 84.4 () Automated name-based View Maps
Oat - Oat-2020-CORE-SV - Oat-2020-CORE-SV_Mrg12 UMN295A locus 0 (cM) Automated name-based View Maps
avgbs2_79816.1.24 locus 125.5 No other positions
avgbs2_79816.1 locus 125.5 No other positions
avgbs_cluster_16546.1.24 locus 125.5 No other positions
avgbs_cluster_16546.1 locus 125.5 No other positions
avgbs2_8038.1.44 locus 120.3 No other positions
avgbs2_8038.1 locus 120.3 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs2_8038.1 locus 2 (cM) Automated name-based View Maps
avgbs_30185 locus 120.3 No other positions
avgbs2_136789.1.41 locus 119.8 No other positions
avgbs2_136789.1 locus 119.8 No other positions
avgbs_cluster_28660.1.41 locus 119.8 No other positions
avgbs_cluster_28660.1 locus 119.8 No other positions
GMI_ES02_c1847_688 locus 119.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 GMI_ES02_c1847_688 locus 119.4 () Automated name-based View Maps
avgbs2_8038.1.46 locus 119.4 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs2_8038.1 locus 2 (cM) Automated name-based View Maps
avgbs2_161889.1.59 locus 119.4 No other positions
avgbs2_161889.1.44 locus 119.4 No other positions
avgbs2_161889.1.38 locus 119.4 No other positions
avgbs2_161889.1.14 locus 119.4 No other positions
avgbs2_161889.1 locus 119.4 No other positions
avgbs_cluster_19880.1.12 locus 119.4 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs_cluster_19880.1 locus 2 (cM) Automated name-based View Maps
avgbs_cluster_19880.1 locus 119.4 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_2As avgbs_cluster_19880.1 locus 2 (cM) Automated name-based View Maps
avgbs_cluster_10369.1.17 locus 119.4 No other positions
avgbs_cluster_10369.1 locus 119.4 No other positions
avgbs_235942 locus 119.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 avgbs_235942 locus 119.4 () Automated name-based View Maps
Oat - Oat-2017-CORE-Pc - Oat-2017-CORE-Pc-Mrg12 avgbs_235942 locus 119.4 () Automated name-based View Maps
avgbs2_33269.1.62 locus 118.7 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.