*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2018-Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2018-Consensus_Mrg13
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2018-Consensus [ View Map Set Info ]
Map Name: Oat-2018-Consensus_Mrg13
Map Start: -10.60
Map Stop: 127.30
Features by Type:
3,920 locus
3,920 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 3,920.       of 157 | Next
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_66662 locus -10.60 No other positions
avgbs_74606 locus -10.60 No other positions
avgbs_14757 locus -3.30 No other positions
avgbs_cluster_25818.1 locus 1.20 No other positions
avgbs_cluster_25818.1.16 locus 1.20 No other positions
avgbs_cluster_25818.1.33 locus 1.20 No other positions
avgbs2_120688.1 locus 1.20 No other positions
avgbs2_120688.1.16 locus 1.20 No other positions
avgbs2_120688.1.33 locus 1.20 No other positions
avgbs_25339 locus 1.90 No other positions
GMI_ES_LB_5090 locus 3.90 Oat - Oat-2016-HxZ - Oat-2016-HxZ_ksh13 GMI_ES_LB_5090 locus 7.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES_LB_5090 locus 3.90 () Automated name-based View Maps
avgbs_cluster_19865.1 locus 4.30 No other positions
avgbs_cluster_19865.1.14 locus 5.70 No other positions
GMI_ES01_c14131_173 locus 6.20 Oat - Oat-2016-PxG - Oat-2016-PxG_29 GMI_ES01_c14131_173 locus 24.30 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_11 GMI_ES01_c14131_173 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES01_c14131_173 locus 6.20 () Automated name-based View Maps
GMI_ES01_c14131_316 locus 6.20 Oat - Oat-2016-PxG - Oat-2016-PxG_29 GMI_ES01_c14131_316 locus 24.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES01_c14131_316 locus 6.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_11 GMI_ES01_c14131_316 locus 0.00 () Automated name-based View Maps
GMI_ES15_c19667_386 locus 6.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES15_c19667_386 locus 6.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_11 GMI_ES15_c19667_386 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_29 GMI_ES15_c19667_386 locus 22.10 () Automated name-based View Maps
GMI_ES22_c3090_150 locus 6.20 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-4 GMI_ES22_c3090_150 locus 105.53 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 GMI_ES22_c3090_150 locus 6.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_11 GMI_ES22_c3090_150 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_29 GMI_ES22_c3090_150 locus 24.30 () Automated name-based View Maps
avgbs_120495 locus 6.20 Oat - Oat-2016-OxT - Oat-2016-OxT_11 avgbs_120495 locus 2.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 avgbs_120495 locus 6.20 () Automated name-based View Maps
avgbs_200326 locus 6.20 Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 avgbs_200326 locus 6.20 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_11 avgbs_200326 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_29 avgbs_200326 locus 36.20 () Automated name-based View Maps
avgbs_240583 locus 6.20 Oat - Oat-2016-OxT - Oat-2016-OxT_11 avgbs_240583 locus 4.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 avgbs_240583 locus 6.20 () Automated name-based View Maps
avgbs_240583.1 locus 6.20 No other positions
avgbs_240583.1.47 locus 6.20 No other positions
avgbs_25339.1 locus 6.20 No other positions
avgbs_25339.1.21 locus 6.20 No other positions
avgbs_38361.1 locus 6.20 Diploid oat - Oat-2019-A_eriantha-physical - Oat-2019-A_eri-phys_2Cp avgbs_38361.1 locus 231.00 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.