*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2018-Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2018-Consensus_Mrg17
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2018-Consensus [ View Map Set Info ]
Map Name: Oat-2018-Consensus_Mrg17
Map Start: 0
Map Stop: 121.7
Features by Type:
6,647 locus
6,647 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 6,647.       of 266 | Next
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMI_DS_LB_6179 locus 0 Oat - Oat-2016-CORE-BYDV - Oat-2016-CORE-BYDV-Mrg17 GMI_DS_LB_6179 locus 0 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_17 GMI_DS_LB_6179 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 GMI_DS_LB_6179 locus 0 () Automated name-based View Maps
Oat - Oat-2016-NSGC - Oat-2016-NSGC_Mrg17 GMI_DS_LB_6179 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2020-CORE-BG - Oat-2020-CORE-BG_Mrg17 GMI_DS_LB_6179 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2020-CORE-SV - Oat-2020-CORE-SV_Mrg17 GMI_DS_LB_6179 locus 0 (cM) Automated name-based View Maps
avgbs_102449 locus 121.7 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 avgbs_102449 locus 121.7 () Automated name-based View Maps
Oat - Oat-2016-NSGC - Oat-2016-NSGC_Mrg17 avgbs_102449 locus 121.7 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_27 avgbs_102449 locus 60.6 () Automated name-based View Maps
avgbs_42915 locus 117.2 Oat - Oat-2016-CORE-BYDV - Oat-2016-CORE-BYDV-Mrg17 avgbs_42915 locus 117.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 avgbs_42915 locus 117.2 () Automated name-based View Maps
avgbs_32319 locus 116.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 avgbs_32319 locus 116.6 () Automated name-based View Maps
avgbs2_182839.1.44 locus 115.6 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg17 avgbs2_182839.1 locus 143.1 (cM) Automated name-based View Maps
avgbs2_182839.1 locus 115.6 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg17 avgbs2_182839.1 locus 143.1 (cM) Automated name-based View Maps
avgbs_200843.1.44 locus 115.6 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg17 avgbs_200843.1 locus 143.1 (cM) Automated name-based View Maps
avgbs_200843.1 locus 115.6 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg17 avgbs_200843.1 locus 143.1 (cM) Automated name-based View Maps
avgbs2_16772.1.7 locus 115.5 No other positions
avgbs2_16772.1 locus 115.5 No other positions
avgbs_cluster_3208.1.7 locus 115.5 No other positions
avgbs_cluster_3208.1 locus 115.5 No other positions
GMI_ES_CC16445_119 locus 114.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 GMI_ES_CC16445_119 locus 114.5 () Automated name-based View Maps
Oat - Oat-2016-PxB - Oat-2016-PxB_27 GMI_ES_CC16445_119 locus 24.8 () Automated name-based View Maps
Oat - Oat-2016-HxZ - Oat-2016-HxZ_ss18 GMI_ES_CC16445_119 locus 26.3 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_34 GMI_ES_CC16445_119 locus 0 () Automated name-based View Maps
Oat - Oat-2016-SxH - Oat-2016-SxH_30 GMI_ES_CC16445_119 locus 0 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_3C GMI_ES_CC16445 locus 93.52 () Automated name-based View Maps
avgbs2_78266.1.20 locus 114.5 No other positions
avgbs2_78266.1.15 locus 114.5 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg17 avgbs2_78266.1 locus 143.2 (cM) Automated name-based View Maps
avgbs2_78266.1 locus 114.5 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg17 avgbs2_78266.1 locus 143.2 (cM) Automated name-based View Maps
avgbs_cluster_16211.1.20 locus 114.5 No other positions
avgbs_cluster_16211.1.15 locus 114.5 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg17 avgbs_cluster_16211.1 locus 143.2 (cM) Automated name-based View Maps
avgbs_cluster_16211.1 locus 114.5 Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg17 avgbs_cluster_16211.1 locus 143.2 (cM) Automated name-based View Maps
avgbs_49714 locus 114 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 avgbs_49714 locus 114 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_23a avgbs_49714 locus 0 () Automated name-based View Maps
avgbs_200843 locus 114 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 avgbs_200843 locus 114 () Automated name-based View Maps
Oat - Oat-2016-DxE - Oat-2016-DxE_23a avgbs_200843 locus 0 () Automated name-based View Maps
avgbs_200222 locus 114 Oat - Oat-2016-DxE - Oat-2016-DxE_23a avgbs_200222 locus 0 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 avgbs_200222 locus 114 () Automated name-based View Maps
avgbs_cluster_41107.1.36 locus 113.5 No other positions
avgbs_cluster_41107.1 locus 113.5 No other positions
avgbs_200032 locus 113.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 avgbs_200032 locus 113.5 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.