*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2018-Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2018-Consensus_Mrg23
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2018-Consensus [ View Map Set Info ]
Map Name: Oat-2018-Consensus_Mrg23
Map Start: 0.00
Map Stop: 124.90
Features by Type:
3,517 locus
3,517 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 3,517.       of 141 | Next
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_71007 locus 3.60 No other positions
avgbs_7556 locus 3.90 No other positions
avgbs_69980 locus 4.40 No other positions
avgbs_112365 locus 4.60 No other positions
avgbs_428279 locus 4.60 No other positions
avgbs_93688 locus 4.90 No other positions
avgbs_245587 locus 5.40 No other positions
avgbs_92452 locus 7.70 Oat - Oat-2016-OxP - Oat-2016-OxP_7 avgbs_92452 locus 7.70 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 avgbs_92452 locus 7.70 () Automated name-based View Maps
avgbs_63876 locus 7.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 avgbs_63876 locus 7.90 () Automated name-based View Maps
avgbs_117292 locus 8.10 Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 avgbs_117292 locus 8.10 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_18 avgbs_117292 locus 63.80 () Automated name-based View Maps
avgbs_231398 locus 8.10 Oat - Oat-2016-PxG - Oat-2016-PxG_20 avgbs_231398 locus 154.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 avgbs_231398 locus 8.10 () Automated name-based View Maps
avgbs_86370 locus 8.10 Oat - Oat-2016-OxT - Oat-2016-OxT_18 avgbs_86370 locus 63.80 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_20 avgbs_86370 locus 154.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 avgbs_86370 locus 8.10 () Automated name-based View Maps
avgbs_cluster_28228.1 locus 8.10 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_3As avgbs_cluster_28228.1 locus 3.00 (cM) Automated name-based View Maps
avgbs_cluster_28228.1.16 locus 8.10 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_3As avgbs_cluster_28228.1 locus 3.00 (cM) Automated name-based View Maps
avgbs_cluster_38177.1 locus 8.10 No other positions
avgbs_cluster_38177.1.9 locus 8.10 No other positions
avgbs2_92015.1 locus 8.10 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_3As avgbs2_92015.1 locus 3.00 (cM) Automated name-based View Maps
avgbs2_92015.1.59 locus 8.10 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_3As avgbs2_92015.1 locus 3.00 (cM) Automated name-based View Maps
avgbs_125307 locus 8.70 Oat - Oat-2016-OxP - Oat-2016-OxP_7 avgbs_125307 locus 9.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 avgbs_125307 locus 8.70 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_20 avgbs_125307 locus 153.80 () Automated name-based View Maps
avgbs_cluster_19622.1 locus 8.70 No other positions
avgbs_cluster_19622.1.19 locus 8.70 No other positions
avgbs_cluster_20098.1 locus 8.70 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_3As avgbs_cluster_20098.1 locus 3.00 (cM) Automated name-based View Maps
avgbs_cluster_20098.1.18 locus 8.70 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_3As avgbs_cluster_20098.1 locus 3.00 (cM) Automated name-based View Maps
avgbs_cluster_29275.1 locus 8.70 No other positions
avgbs_cluster_29275.1.15 locus 8.70 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.