*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2018-Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2018-Consensus_Mrg28
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2018-Consensus [ View Map Set Info ]
Map Name: Oat-2018-Consensus_Mrg28
Map Start: -3.3
Map Stop: 104.4
Features by Type:
4,567 locus
4,567 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 4,567.       Previous | of 183 | Next
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg28
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
avgbs_2681.1 locus 96.2 No other positions
avgbs_214966 locus 96.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 avgbs_214966 locus 96.2 () Automated name-based View Maps
GMI_GBS_10652 locus 95.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 GMI_GBS_10652 locus 95.6 () Automated name-based View Maps
avgbs_29018 locus 93.8 No other positions
UMN706A locus 93.2 Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 UMN706A locus 58.75 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_X1 UMN706A locus 55 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 umn706a locus 147 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 UMN706A locus 93.2 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_23 UMN706A locus 24.7 () Automated name-based View Maps
avgbs2_136247.1.63 locus 89.2 No other positions
avgbs2_136247.1.12 locus 89.2 No other positions
avgbs2_136247.1 locus 89.2 No other positions
avgbs2_111678.1.29 locus 89.2 No other positions
avgbs2_111678.1.15 locus 89.2 No other positions
avgbs2_111678.1 locus 89.2 No other positions
avgbs_cluster_65080.1.63 locus 89.2 No other positions
avgbs_cluster_65080.1.12 locus 89.2 No other positions
avgbs_cluster_65080.1 locus 89.2 No other positions
avgbs_cluster_23908.1.29 locus 89.2 No other positions
avgbs_cluster_23908.1.15 locus 89.2 No other positions
avgbs_cluster_23908.1 locus 89.2 No other positions
avgbs_230309.1.60 locus 89.2 No other positions
avgbs_230309.1 locus 89.2 No other positions
avgbs_230309 locus 89.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 avgbs_230309 locus 89.2 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_20 avgbs_230309 locus 95.4 () Automated name-based View Maps
Oat - Oat-2016-PxG - Oat-2016-PxG_15a avgbs_230309 locus 10 () Automated name-based View Maps
avgbs_108335 locus 89.2 No other positions
avgbs_53885 locus 87.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-28 avgbs_53885 locus 87.4 () Automated name-based View Maps
avgbs2_86703.2.26 locus 86.7 No other positions
avgbs2_86703.2.18 locus 86.7 No other positions
avgbs2_86703.2 locus 86.7 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.