*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2019-TX07CSxHidalgo
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2019-TxH_Mrg21
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2019-TX07CSxHidalgo [ View Map Set Info ]
Map Name: Oat-2019-TxH_Mrg21
Map Start: 0 cM
Map Stop: 96.8 cM
Features by Type:
303 locus
303 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 303.       of 13 | Next
Oat - Oat-2019-TX07CSxHidalgo - Oat-2019-TxH_Mrg21
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
avgbs2_66603.1 locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_66603.1 locus 122.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_66603.1.60 locus 122.8 () Automated name-based View Maps
avgbs_cluster_16814.2 locus 1 No other positions
avgbs2_135995.1 locus 2.3 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_135995.1 locus 122.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_135995.1.12 locus 122.8 () Automated name-based View Maps
avgbs2_71505.1 locus 2.7 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_71505.1 locus 113.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_71505.1.13 locus 113.2 () Automated name-based View Maps
avgbs_49994.1 locus 8.6 No other positions
avgbs2_75221.1 locus 9.3 Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_5As avgbs2_75221.1 locus 187 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_75221.1 locus 111.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_75221.1.22 locus 111.3 () Automated name-based View Maps
avgbs_400910.1 locus 9.3 No other positions
avgbs_cluster_18230.1 locus 9.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_18230.1.30 locus 111.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_18230.1 locus 111.3 () Automated name-based View Maps
avgbs_5733.1 locus 11.2 No other positions
avgbs_cluster_32790.1 locus 11.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_32790.1 locus 113.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_32790.1.20 locus 113.2 () Automated name-based View Maps
avgbs_cluster_22251.1 locus 11.2 No other positions
avgbs_cluster_32312.1 locus 11.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_32312.1.29 locus 114.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_32312.1 locus 114.7 () Automated name-based View Maps
avgbs2_130081.1 locus 11.5 No other positions
avgbs_cluster_3645.1 locus 11.5 No other positions
avgbs_cluster_13204.1 locus 11.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_13204.1.36 locus 122.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_13204.1 locus 122.8 () Automated name-based View Maps
avgbs_119304.1 locus 14.2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_119304.1 locus 122.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_119304.1.27 locus 122.8 () Automated name-based View Maps
avgbs2_188948.1 locus 14.7 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_188948.1 locus 122.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_188948.1.36 locus 122.8 () Automated name-based View Maps
avgbs2_140037.1 locus 15.3 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_140037.1 locus 125.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_140037.1.24 locus 125.8 () Automated name-based View Maps
avgbs2_182031.1 locus 15.3 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_182031.1 locus 125.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_182031.1.52 locus 125.8 () Automated name-based View Maps
avgbs_cluster_8856.1 locus 15.3 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_8856.1 locus 122.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_8856.1.57 locus 122.8 () Automated name-based View Maps
avgbs_cluster_5157.1 locus 15.3 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_5157.1.48 locus 123.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_5157.1 locus 123.5 () Automated name-based View Maps
avgbs_cluster_5822.1 locus 15.3 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_5822.1 locus 122.8 () Automated name-based View Maps
Diploid oat - Oat-2019-A_atlantica-physical - Oat-2019-A_atl-phys_5As avgbs_cluster_5822.1 locus 153 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs_cluster_5822.1.23 locus 122.8 () Automated name-based View Maps
avgbs2_152165.1 locus 15.3 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_152165.1.36 locus 125.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 avgbs2_152165.1 locus 125.8 () Automated name-based View Maps
avgbs2_140037.2 locus 15.3 No other positions
avgbs2_17183.1 locus 15.3 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.