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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, CxI
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps Oat-CxI-2
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, CxI [ View Map Set Info ]
Map Name: Oat-CxI-2
Map Start: 0
Map Stop: 145
Features by Type:
37 locus
37 Total

Map Features

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Items 1 to 25 of 37.       of 2 | Next
Oat - Oat, CxI - Oat-CxI-2
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
E1M6-9a locus 51 Diploid oat - Diploid Oat, AFLP - Avena-Yu-G E1M6-9a locus 136.5 () Automated name-based View Maps
e8m3-1 locus 0 No other positions
e6m4-5 locus 0 No other positions
e2m2-6 locus 12 No other positions
e3m5-6a locus 12 No other positions
e3m5-13 locus 12 No other positions
e4m2-5 locus 12 No other positions
e5m5-11 locus 12 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-22 e5m5-11 locus 70 () Automated name-based View Maps
e8m3-5n locus 30 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5-30 e8m3-5n locus 90 () Automated name-based View Maps
e3m7-4 locus 39 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e3m7-4 locus 20 () Automated name-based View Maps
e2m2-1f locus 39 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-28 e2m2-1f locus 82 () Automated name-based View Maps
e5m5-7 locus 39 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-15 e5m5-7 locus 10 () Automated name-based View Maps
e3m3-13 locus 45 No other positions
e9m5-11 locus 48 No other positions
e3m5-7 locus 48 No other positions
e8m8-9 locus 48 No other positions
e2m2-1d locus 51 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-3 e2m2-1d locus 4 () Automated name-based View Maps
e5m5-8 locus 51 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-15 e5m5-8 locus 10 () Automated name-based View Maps
e6m6-19 locus 51 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-8 e6m6-19 locus 40 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-15 e6m6-19 locus 10 () Automated name-based View Maps
e1m6-1 locus 54 No other positions
e1m3-8 locus 54 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-21 e1m3-8 locus 0 () Automated name-based View Maps
e8m8-5 locus 57 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-6-37 e8m8-5 locus 174 () Automated name-based View Maps
e1m6-9 locus 57 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-13 e1m6-9 locus 14 () Automated name-based View Maps
e6m6-12 locus 57 No other positions
e6m6-5 locus 60 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-11 e6m6-5 locus 8 () Automated name-based View Maps

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