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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, CxI
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-CxI-6
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, CxI [ View Map Set Info ]
Map Name: Oat-CxI-6
Map Start: 0
Map Stop: 53
Features by Type:
23 locus
23 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 23 of 23.
Oat - Oat, CxI - Oat-CxI-6
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
e1m6-13 locus 0 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-15 e1m6-13 locus 0 () Automated name-based View Maps
e5m1-1 locus 0 No other positions
e7m2-7a locus 19.5 No other positions
e9m5-6 locus 0 No other positions
e6m6-13 locus 6 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5-30 e6m6-13 locus 108 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e6m6-13 locus 28 () Automated name-based View Maps
e1m3-4 locus 7.5 No other positions
e8m3-14 locus 10.5 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e8m3-14 locus 49 () Automated name-based View Maps
e3m3-11 locus 10.5 No other positions
e6m5-7 locus 10.5 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-7 e6m5-7 locus 12 () Automated name-based View Maps
e9m6-1a locus 10.5 No other positions
e5m5-10 locus 13.5 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-22 e5m5-10 locus 74 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e5m5-10 locus 41 () Automated name-based View Maps
e6m6-7 locus 16.5 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-3 e6m6-7 locus 88 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e6m6-7 locus 20 () Automated name-based View Maps
e4m7-1a locus 19.5 No other positions
e6m6-14a locus 21.5 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e6m6-14a locus 20 () Automated name-based View Maps
e1m3-10 locus 21.5 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-14 e1m3-10 locus 0 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e1m3-10 locus 38 () Automated name-based View Maps
e4m6-1a locus 21.5 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e4m6-1a locus 16 () Automated name-based View Maps
e9m5-7 locus 21.5 No other positions
e9m5-15 locus 24.5 No other positions
e1m8-2 locus 30.5 No other positions
e5m5-3 locus 38 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-2 e5m5-3 locus 116 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e5m5-3 locus 49 () Automated name-based View Maps
e1m3-11 locus 53 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e1m3-11 locus 41 () Automated name-based View Maps
e9m6-4 locus 53 No other positions
e1m8-8 locus 53 No other positions

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