*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, KxO/QTL
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-KxO/Q-20
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, KxO/QTL [ View Map Set Info ]
Map Name: Oat-KxO/Q-20
Map Start: -0.60
Map Stop: 41.20
Features by Type:
8 locus
17 qtl
25 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 25.
Oat - Oat, KxO/QTL - Oat-KxO/Q-20
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbcd421A locus 0.00 Oat - Oat, KxO - Oat-KxO-20 Xbcd421A locus 0.00 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20 Xbcd421A locus 0.00 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xbcd421A locus 34.10 () Automated name-based View Maps
Xcdo1090C locus 9.90 Oat - Oat, KxO - Oat-KxO-20 Xcdo1090C locus 9.90 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20 Xcdo1090C locus 12.00 () Automated name-based View Maps
Xbcd1716B locus 23.10 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20 Xbcd1716B locus 24.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xbcd1716B locus 23.10 () Automated name-based View Maps
Xumn364A locus 39.60 Oat - Oat, KxO - Oat-KxO-20 Xumn364A locus 39.60 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20 Xumn364A locus 24.00 () Automated name-based View Maps
Xisu1543A locus 36.50 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20 Xisu1543A locus 28.00 () Automated name-based View Maps
Xbcd1931 locus 27.00 Oat - Oat, KxO - Oat-KxO-20 Xbcd1931 locus 27.00 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20 Xbcd1931 locus 32.00 () Automated name-based View Maps
Xbcd1860 locus 30.90 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xbcd1860 locus 101.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xbcd1860 locus 30.90 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xbcd1860 locus 89.40 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20 Xbcd1860 locus 34.00 () Automated name-based View Maps
Xcdo1428A locus 17.50 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20 Xcdo1428A locus 34.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xcdo1428A locus 17.50 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo1428A locus 34.10 () Automated name-based View Maps
Yield, KxO-20-b qtl 9.30 - 11.40 No other positions
Yield, KxO-20-c qtl 21.30 - 23.70 No other positions
Yield, KxO-20-d qtl 38.00 - 41.20 No other positions
Yield, KxO-20-e qtl 9.30 - 41.20 No other positions
Yield, KxO-20-f qtl 9.30 - 23.70 No other positions
Yield, KxO-20-g qtl 9.30 - 27.60 No other positions
Yield, KxO-20-a qtl 38.00 - 41.20 No other positions
Test weight, KxO-20-a qtl 9.30 - 11.40 No other positions
Test weight, KxO-20-b qtl 25.00 - 27.60 No other positions
Test weight, KxO-20-c qtl 16.90 - 32.50 No other positions
Test weight, KxO-20-d qtl 38.00 - 41.20 No other positions
BYDV, KxO-20 qtl -0.60 - 32.50 No other positions
Height, KxO-20-a qtl -0.60 - 2.40 No other positions
Height, KxO-20-b qtl 38.00 - 41.20 No other positions
Height, KxO-20-c qtl 35.90 - 41.20 No other positions
Height, KxO-20-d qtl 16.90 - 41.20 No other positions
Height, KxO-20-e qtl 16.90 - 27.60 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.