*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, KxO/QTL
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-KxO/Q-5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, KxO/QTL [ View Map Set Info ]
Map Name: Oat-KxO/Q-5
Map Start: -0.60
Map Stop: 88.20
Features by Type:
14 locus
12 qtl
26 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 26.       of 2 | Next
Oat - Oat, KxO/QTL - Oat-KxO/Q-5
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xumn214B locus 49.40 Oat - Oat, KxO - Oat-KxO-5 Xumn214B locus 49.40 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 Xumn214B locus 0.00 () Automated name-based View Maps
Xcdo1242 locus 46.10 Oat - Oat, KxO - Oat-KxO-5 Xcdo1242 locus 46.10 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 Xcdo1242 locus 0.00 () Automated name-based View Maps
Xumn106 locus 56.20 Oat - Oat, KxO - Oat-KxO-5 Xumn106 locus 58.20 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 Xumn106 locus 36.00 () Automated name-based View Maps
Xbcd1580 locus 60.20 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 Xbcd1580 locus 40.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-5 Xbcd1580 locus 62.20 () Automated name-based View Maps
Xbcd1897A locus 64.40 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 Xbcd1897A locus 46.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-5 Xbcd1897A locus 66.40 () Automated name-based View Maps
Xcdo1358 locus 76.50 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 Xcdo1358 locus 68.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-5 Xcdo1358 locus 78.50 () Automated name-based View Maps
Xcdo1081 locus 80.80 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 Xcdo1081 locus 68.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D Xcdo1081 locus 87.00 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-6 Xcdo1081 locus 35.20 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo1081 locus 21.70 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-5 Xcdo1081 locus 82.80 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xcdo1081 locus 35.10 () Automated name-based View Maps
Xcdo1433 locus 87.80 Oat - Oat, KxO - Oat-KxO-5 Xcdo1433 locus 89.80 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 Xcdo1433 locus 76.00 () Automated name-based View Maps
Xwg605 locus 12.60 Oat - Oat, KxO - Oat-KxO-5 Xwg605 locus 12.60 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xwg605 locus 1.01 () Automated name-based, Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xwg605 locus 0.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xwg605 locus 51.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xwg605 locus 40.00 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5-30 Xwg605 locus 86.00 () Automated name-based View Maps
Xumn5047 locus 0.00 Oat - Oat, KxO - Oat-KxO-5 Xumn5047 locus 0.00 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5-30 Xumn5047 locus 90.00 () Automated name-based View Maps
Xcdo370 locus 7.80 Oat - Oat, KxO - Oat-KxO-5 Xcdo370 locus 7.80 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5-30 Xcdo370 locus 100.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B Xcdo370 locus 79.00 () Automated name-based View Maps
Xcdo1319B locus 5.80 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5-30 Xcdo1319B locus 104.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-5 Xcdo1319B locus 5.80 () Automated name-based View Maps
Xcdo1396 locus 29.20 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5-30 Xcdo1396 locus 128.00 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xcdo1396 locus 20.20 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-5 Xcdo1396 locus 29.20 () Automated name-based View Maps
Xcdo1423B locus 54.20 Oat - Oat, KxO - Oat-KxO-5 Xcdo1423B locus 54.20 () Automated name-based View Maps
Test weight, KxO-5-a qtl -0.60 - 13.20 No other positions
Test weight, KxO-5-b qtl 7.20 - 9.90 No other positions
Test weight, KxO-5-c qtl 7.20 - 13.20 No other positions
Test weight, KxO-5-d qtl 5.20 - 13.20 No other positions
Test weight, KxO-5-e qtl -0.60 - 13.20 No other positions
Straw yield, KxO-5-a qtl -0.60 - 2.40 No other positions
Straw yield, KxO-5-b qtl 45.50 - 60.80 No other positions
Straw yield, KxO-5-c qtl 48.50 - 51.80 No other positions
BYDV, KxO-5 qtl 58.20 - 60.80 No other positions
Days to heading, KxO-5-a qtl 58.20 - 60.80 No other positions
Days to heading, KxO-5-b qtl 85.80 - 88.20 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.