*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-KxO-14
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, KxO [ View Map Set Info ]
Map Name: Oat-KxO-14
Map Start: 0
Map Stop: 36
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Oat - Oat, KxO - Oat-KxO-14
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xcdo400 locus 22.5 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo400 locus 110.6 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_11 Xcdo400 locus 17.1 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-E Xcdo400 locus 593.4 () Automated name-based View Maps
Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF Xcdo400 locus 131.79 (cM) Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 Xcdo400 locus 24 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xcdo400 locus 4.81 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xcdo400 locus 68 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 Xcdo400 locus 14.12 (cM) Automated name-based View Maps
Oat - Oat-2000-KxM-Bgl - Oat-2000-KxM-Bgl_14 Xcdo400 locus 0 () Automated name-based View Maps
Oat - Oat-2000-KxO-Bgl - Oat-2000-KxO-Bgl_14 Xcdo400 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo400 locus 73 () Automated name-based, Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_11 Xcdo400 locus 16 (cM) Automated name-based View Maps
Xcdo57D locus 36 Oat - Oat, KxO/QTL - Oat-KxO/Q-14 Xcdo57D locus 36 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-14 Xcdo57D locus 8 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_14 Xcdo57D locus 36 (cM) Automated name-based View Maps
Xcdo1192B locus 30.8 Oat - Oat, KxO/QTL - Oat-KxO/Q-14 Xcdo1192B locus 30.8 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-5B cdo1192 locus 102.21 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5B cdo1192 locus 43.1 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-14 Xcdo1192B locus 16 () Automated name-based View Maps
Xumn339A locus 28.1 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-14 Xumn339A locus 20 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-14 Xumn339A locus 28.1 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 Xumn339A locus 10.59 (cM) Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_14 Xumn339A locus 28.1 (cM) Automated name-based View Maps
Xwg719A locus 22.5 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-14 Xwg719A locus 26 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-14 Xwg719A locus 22.5 () Automated name-based View Maps
Xbcd1184 locus 19.5 Oat - Oat, KxO/QTL - Oat-KxO/Q-14 Xbcd1184 locus 19.5 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-C Xbcd1184 locus 12.6 () Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 Xbcd1184 locus 12 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 Xbcd1184 locus 17.76 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-14 Xbcd1184 locus 30 () Automated name-based View Maps
Xcdo1495 locus 17.3 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xcdo1495 locus 33.3 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-14 Xcdo1495 locus 17.3 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-14 Xcdo1495 locus 34 () Automated name-based View Maps
Xcdo1430 locus 9.9 Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 cdo1430 locus 8 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_13 CDO1430 locus 40.7 () Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 Xcdo1430 locus 8.9 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_14 CDO1430 locus 33 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO1430 locus 51 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-14 Xcdo1430 locus 9.9 () Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 cdo1430 locus 9.7 () Automated name-based View Maps
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN12 cdo1430 locus 8 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 cdo1430 locus 32.8 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-14 Xcdo1430 locus 42 () Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 cdo1430 locus 8.9 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO1430 locus 51 () Automated name-based View Maps
Xcdo1509A locus 5.8 Oat - Oat, KxO/QTL - Oat-KxO/Q-14 Xcdo1509A locus 5.8 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_24 Xcdo1509A locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-14 Xcdo1509A locus 46 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 Xcdo1509A locus 29.53 (cM) Automated name-based View Maps
Xcdo665A locus 0 Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_24 Xcdo665A locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_24 Xcdo665A locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-14 Xcdo665A locus 0 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-14 Xcdo665A locus 52 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B Xcdo665A locus 56 () Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_24 Xcdo665A locus 0 (cM) Automated name-based View Maps
Xcdo64 locus 13.6 Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 Xcdo64 locus 0 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo64 locus 55.3 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 Xcdo64 locus 21.18 (cM) Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xcdo64 locus -15.6 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xcdo64 locus -64 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xcdo64 locus -3.08 () Automated name-based, Automated name-based View Maps
Xbcd1729 locus 9.9 Oat - Oat-2009-KxO - Oat-2009-KxO_14 BCD1729 locus 33 (cM) Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 bcd1729 locus 16.6 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 bcd1729 locus 24.82 (cM) Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 bcd1729 locus 12.6 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 BCD1729 locus 51 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 bcd1729 locus 31.5 () Automated name-based View Maps
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN12 bcd1729 locus 16.6 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 BCD1729 locus 51 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 Xbcd1729 locus 24.82 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO14 bcd1729 locus 31 (cM) Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 bcd1729 locus 13.5 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_13 BCD1729 locus 40.7 () Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 Xbcd1729 locus 12.6 (cM) Automated name-based View Maps
Xbcd1842C locus 7.9 Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_12 bcd1842 locus 8.8 (cM) Automated name-based View Maps
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN12 bcd1842 locus 8.8 (cM) Automated name-based View Maps
Oat - Oat-2009-MxN-RGA - Oat-2009-MxN-RGA_MN12 bcd1842 locus 10.2 (cM) Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-12 bcd1842 locus 11 () Automated name-based View Maps
Xcdo203D locus 35.2 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-6 cdo203 locus 185.8 () Automated name-based View Maps
Xcdo1090E locus 34.4 Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_14 Xcdo1090E locus 34.4 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 Xcdo1090E locus 5.76 (cM) Automated name-based View Maps
Xcdo1359 locus 19.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO1359 locus 51.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO1359 locus 51.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_14 CDO1359 locus 22 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 cdo1359 locus 24.4 () Automated name-based View Maps
Xisu1540 locus 29.5 Oat - Oat-2009-KxO - Oat-2009-KxO_14 ISU1540 locus 12 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 ISU1540 locus 12.5 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-L ISU1540 locus 38.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 ISU1540 locus 67.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 ISU1540 locus 67.6 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.