*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-KxO-4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, KxO [ View Map Set Info ]
Map Name: Oat-KxO-4
Map Start: 0
Map Stop: 50.2
Features by Type:
20 locus
20 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 20 of 20.
Oat - Oat, KxO - Oat-KxO-4
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xcdo1473b locus 6 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 Xcdo1473B locus 19 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xcdo1473b locus 49 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xcdo1473B locus 11.25 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-A Xcdo1473b locus 260.8 () Automated name-based View Maps
Xcdo580 locus 39.3 Diploid oat - Diploid Oat, AFLP - Avena-Yu-A Xcdo580 locus 428.5 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Xcdo580 locus 48 () Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xcdo580 locus 39.3 (cM) Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xcdo580 locus 15.8 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xcdo580 locus 47 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xcdo580 locus -2.02 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xcdo580 locus 53 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xcdo580 locus 12.7 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xcdo580 locus -2.5 () Automated name-based View Maps
Wheat A - T. monococcum, G1777 x G2528 - Tm-Dubcovsky-1A Xcdo580 locus -4.1 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xcdo580 locus 40 (cM) Automated name-based View Maps
Wheat A - 1AS, T.m. G1777 x G2528 - 1AS, T.m. G1777 x G2528 Xcdo580 locus -3.4 () Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A Xcdo580 locus -2 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xcdo580 locus 48 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_11 Xcdo580 locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Xcdo580 locus 40.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xcdo580 locus 43 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xcdo580 locus 35.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xcdo580 locus -81 () Automated name-based, Automated name-based View Maps
Avn-A locus 0 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Avn-A locus 0 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Avn-A locus 0 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-4_12 Avn-A locus 0 () Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Avn-A locus 0 (cM) Automated name-based View Maps
Oat - Oat-2010-MAMA - Oat-2010-MAMA-KO_4_12_13 Avn-A locus 36 (cM) Automated name-based View Maps
Xumn214A locus 12 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 umn214 locus 19 (cM) Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xumn214A locus 12 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Xumn214A locus 16 () Automated name-based View Maps
Oat - Oat-2010-MAMA - Oat-2010-MAMA-OTDu_1 umn214 locus 5 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Xumn214A locus 12 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xumn214A locus 11.25 (cM) Automated name-based View Maps
Xumn101 locus 14.8 Oat - Oat-2010-MAMA - Oat-2010-MAMA-OTDu_1 umn101 locus 5 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Xumn101 locus 14.8 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-4_12 umn101 locus 15.3 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 UMN101 locus 19 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Xumn101 locus 20 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xumn101 locus 19 (cM) Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xumn101 locus 14.8 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 UMN101 locus 78.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 UMN101 locus 78.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_4_12_13 UMN101 locus 127 (cM) Automated name-based View Maps
Xumn341A locus 16.9 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Xumn341A locus 22 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Xumn341A locus 16.9 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xumn341A locus 19 (cM) Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xumn341A locus 16.9 (cM) Automated name-based View Maps
Xcdo309A locus 22.1 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Xcdo309A locus 26 () Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xcdo309A locus 22.1 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xcdo309A locus 24 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Xcdo309A locus 22.1 () Automated name-based View Maps
Xcdo718B locus 31 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 Xcdo718B locus 76 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xcdo718B locus 32.75 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Xcdo718B locus 34 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_16 Xcdo718B locus 76 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 Xcdo718B locus 76 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Xcdo718B locus 32 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 Xcdo718B locus 76 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_6 Xcdo718B locus 76 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_9 Xcdo718B locus 76 (cM) Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xcdo718B locus 31 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3A Xcdo718B locus 77 () Automated name-based View Maps
Xcdo618A locus 44.9 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Xcdo618A locus 52 () Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xcdo618A locus 44.9 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Xcdo618A locus 45.9 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xcdo618A locus 40 (cM) Automated name-based View Maps
Xcdo220 locus 49.2 Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xcdo220 locus 45 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 Xcdo220 locus 81 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_16 Xcdo220 locus 81 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-4 Xcdo220 locus 50.2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 Xcdo220 locus 81 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_6 Xcdo220 locus 81 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-4 Xcdo220 locus 56 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 Xcdo220 locus 81 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_9 Xcdo220 locus 81 (cM) Automated name-based View Maps
Oat - Oat-1997-64Lines - Oat-1997-64Lines_4 Xcdo220 locus 0 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xcdo220 locus 50.6 () Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xcdo220 locus 49.2 (cM) Automated name-based View Maps
Xumn333 locus 50.2 Oat - Oat-2016-KxO - Oat-2016-KxO_18 UMN333 locus 7.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 UMN333 locus 45 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-4_12 umn333 locus 49.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 UMN333 locus 44.8 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_4_12_13 UMN333 locus 156 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 UMN333 locus 44.8 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xumn333 locus 45 (cM) Automated name-based View Maps
Xumn853 locus 6 Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xumn853 locus 11.25 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-4_12 umn853 locus 12.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 UMN853 locus 78.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 UMN853 locus 78.5 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 UMN853 locus 11.25 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_4_12_13 UMN853 locus 127 (cM) Automated name-based View Maps
Xumn869 locus 6 Oat - Oat-2009-KxO - Oat-2009-KxO_4_12_13 UMN869 locus 127 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 UMN869 locus 78.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 UMN869 locus 78.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-4_12 umn869 locus 15.3 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 UMN869 locus 19 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xumn869 locus 19 (cM) Automated name-based View Maps
Xbcd1482B locus 6 Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xbcd1482B locus 11.25 (cM) Automated name-based View Maps
Xcdo1173A locus 42.1 Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xcdo1173A locus 40 (cM) Automated name-based View Maps
Xcdo1423A locus 19.5 Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xcdo1423A locus 19 (cM) Automated name-based View Maps
Xumn30 locus 14.2 Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 UMN30 locus 19 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xumn30 locus 19 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-4_12 umn30 locus 13.8 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_18 UMN30 locus 58.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_4_12_13 UMN30 locus 127 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 UMN30 locus 78.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 UMN30 locus 78.5 () Automated name-based View Maps
Xumn282 locus 13.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg19 UMN282 locus 78.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-4_12 umn282 locus 12.5 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 UMN282 locus 19 (cM) Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_4 Xumn282 locus 13.6 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_4_12_13 UMN282 locus 127 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xumn282 locus 19 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-19 UMN282 locus 78.5 () Automated name-based View Maps
Xumn295B locus 42.1 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-8 umn295 locus 55.2 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_4-12 Xumn295B locus 40 (cM) Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_8 umn295 locus 52.2 (cM) Automated name-based View Maps
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN8 umn295 locus 52.2 (cM) Automated name-based View Maps
Xumn341B locus 14.2 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.