*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, KxO, AFLP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-KxO/AFLP-5-30
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, KxO, AFLP [ View Map Set Info ]
Map Name: Oat-KxO/AFLP-5-30
Map Start: 0
Map Stop: 128
Features by Type:
43 locus
43 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 43.       of 2 | Next
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5-30
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
E1M3-3a locus 108 Diploid oat - Diploid Oat, AFLP - Avena-Yu-C E1M3-3a locus 51.9 () Automated name-based View Maps
e2m3-1 locus 46 Oat - Oat, CxI - Oat-CxI-1 e2m3-1 locus 45 () Automated name-based View Maps
e8m3-5n locus 90 Oat - Oat, CxI - Oat-CxI-2 e8m3-5n locus 30 () Automated name-based View Maps
e6m6-13 locus 108 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 e6m6-13 locus 28 () Automated name-based View Maps
Oat - Oat, CxI - Oat-CxI-6 e6m6-13 locus 6 () Automated name-based View Maps
e1m6-6 locus 90 Oat - Oat, CxI - Oat-CxI-10 e1m6-6 locus 0 () Automated name-based View Maps
e3m7-2 locus 94 Oat - Oat, CxI - Oat-CxI-10 e3m7-2 locus 42 () Automated name-based View Maps
e2m3-12 locus 74 Oat - Oat, CxI - Oat-CxI-10 e2m3-12 locus 45 () Automated name-based View Maps
e2m2-5 locus 90 Oat - Oat, CxI - Oat-CxI-10 e2m2-5 locus 45 () Automated name-based View Maps
e4m8-4 locus 100 Oat - Oat, CxI - Oat-CxI-10 e4m8-4 locus 48 () Automated name-based View Maps
e6m5-2 locus 128 Oat - Oat, CxI - Oat-CxI-10 e6m5-2 locus 49.5 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-2 e6m5-2 locus 0 () Automated name-based View Maps
e6m6-6n locus 74 Oat - Oat, CxI - Oat-CxI-10 e6m6-6n locus 51 () Automated name-based View Maps
e2m2-5a locus 66 Oat - Oat, CxI - Oat-CxI-10 e2m2-5a locus 52.5 () Automated name-based View Maps
e6m5-5 locus 92 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-2 e6m5-5 locus 0 () Automated name-based View Maps
Oat - Oat, CxI - Oat-CxI-10 e6m5-5 locus 55.5 () Automated name-based View Maps
e4m6-6a locus 92 Oat - Oat, CxI - Oat-CxI-10 e4m6-6a locus 76.5 () Automated name-based View Maps
e6m4-3b locus 90 Oat - Oat, CxI - Oat-CxI-10 e6m4-3b locus 94.5 () Automated name-based View Maps
e1m3-3 locus 120 Oat - Oat, CxI - Oat-CxI-15 e1m3-3 locus 97.5 () Automated name-based View Maps
e4m6-17 locus 0 No other positions
e6m5-1 locus 46 No other positions
e5m7-13 locus 8 No other positions
e3m7-9 locus 12 No other positions
e3m7-26 locus 12 No other positions
Px locus 12 Oat - Oat, KxO - Oat-KxO-30 Px locus 6.3 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-30 Px locus 6.3 () Automated name-based View Maps
e3m7-15 locus 12 No other positions
Xptb17 locus 16 Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_30 Xptb17 locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-30 Xptb17 locus 0 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-30 Xptb17 locus 0 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_30 Xptb17 locus 0 (cM) Automated name-based View Maps
Xumn109 locus 20 Oat - Oat, KxO/QTL - Oat-KxO/Q-30 Xumn109 locus 9.7 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_30 Xumn109 locus 11.48 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-30 Xumn109 locus 9.7 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.