*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, OxT
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-OxT-23
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, OxT [ View Map Set Info ]
Map Name: Oat-OxT-23
Map Start: 0
Map Stop: 12.6
Features by Type:
2 locus
2 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 2 of 2.
Oat - Oat, OxT - Oat-OxT-23
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
cdo400 locus 0 Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 cdo400 locus 18.8 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-5H cdo400 locus 117.92 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-2 cdo400 locus 68 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H cdo400 locus 152.7 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-1H cdo400 locus 178.46 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-1H cdo400 locus 144.18 () Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-5D cdo400 locus 462.8 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 cdo400 locus 14.12 (cM) Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-1 cdo400 locus 144.18 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_11 cdo400 locus 16 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_14 CDO400 locus 18 (cM) Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H cdo400 locus 144.18 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_11 cdo400 locus 17.1 (cM) Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 CDO400 locus 24 (cM) Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-5H cdo400 locus 111.7 () Automated name-based View Maps
Oat - Oat-2001-KxM - Oat-2001-KxM_14 cdo400 locus 24 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO14 cdo400 locus 19 (cM) Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-1H CDO400a locus 114 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-1H cdo400 locus 230.98 () Automated name-based View Maps
Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF cdo400 locus 131.79 (cM) Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H cdo400 locus 151.97 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF cdo400 locus 161 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO400 locus 58.9 () Automated name-based View Maps
rz69b locus 12.6 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 RZ69B locus 35.4 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.