*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, OxT
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-OxT-15
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, OxT [ View Map Set Info ]
Map Name: Oat-OxT-15
Map Start: 0.00
Map Stop: 107.90
Features by Type:
18 locus
18 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 18 of 18.
Oat - Oat, OxT - Oat-OxT-15
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
RZ596 locus 78.10 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xrz596 locus 108.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 RZ596 locus 74.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 RZ596 locus 74.80 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-9 RZ596 locus 68.50 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-7 RZ596 locus 56.20 () Automated name-based View Maps
CDO962a locus 44.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO962A locus 82.40 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-8 CDO962a locus 96.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO962A locus 82.40 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 CDO962a locus 5.28 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 CDO962A locus 36.00 (cM) Automated name-based View Maps
CDO455a locus 3.70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 CDO455A locus 83.90 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-8 CDO455a locus 101.25 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 CDO455A locus 83.90 () Automated name-based View Maps
bcd926 locus 73.50 Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-5H bcd926 locus 79.52 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 bcd926 locus 81.94 () Automated name-based View Maps
Barley - Barley, Pilot OPA1, Consensus - Hordeum-PilotOPA1-5H bcd926 locus 84.10 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H bcd926 locus 81.94 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H bcd926 locus 94.70 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H bcd926 locus 79.00 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H bcd926 locus 142.37 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-9 bcd926 locus 57.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 BCD926 locus 67.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 BCD926 locus 67.60 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5A bcd926 locus 35.70 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H bcd926 locus 81.94 () Automated name-based View Maps
cdo1090b locus 76.20 Oat - Oat, KxO, 2003 - Oat-KxO/2003-32 cdo1090b locus 12.40 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_32 CDO1090B locus 12.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 CDO1090B locus 83.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO1090B locus 67.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 CDO1090B locus 83.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO1090B locus 67.60 () Automated name-based View Maps
cdo1508b locus 107.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 CDO1508B locus 95.30 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-16_23 cdo1508b locus 3.28 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 CDO1508B locus 95.30 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_16_23 CDO1508B locus 3.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO1508B locus 51.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO1508B locus 51.70 () Automated name-based View Maps
cdo412b locus 72.70 Oat - Oat, KxO, 2003 - Oat-KxO/2003-16_23 cdo412b locus 31.50 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 CDO412B locus 61.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 CDO412B locus 61.10 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_10 CDO412B locus 48.30 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_16_23 CDO412B locus 42.00 (cM) Automated name-based View Maps
cdo516a locus 4.50 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 CDO516A locus 83.90 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 CDO516A locus 83.90 () Automated name-based View Maps
cdo57d locus 74.30 Oat - Oat-2009-KxO - Oat-2009-KxO_14 CDO57D locus 7.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO57D locus 67.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO57D locus 67.60 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 cdo57d locus 6.40 () Automated name-based View Maps
isu37b locus 81.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 ISU37B locus 78.60 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_14a ISU37B locus 27.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 ISU37B locus 78.60 () Automated name-based View Maps
isu47b locus 46.40 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 ISU47B locus 51.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 ISU47B locus 51.40 () Automated name-based View Maps
oisu2203 locus 95.10 Oat - Oat-2016-OxT - Oat-2016-OxT_14a OISU2203 locus 18.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 OISU2203 locus 85.60 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 OISU2203 locus 85.60 () Automated name-based View Maps
oisu563a locus 84.90 No other positions
oisu582b locus 107.90 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 OISU582B locus 51.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 OISU582B locus 51.70 () Automated name-based View Maps
rz892b locus 35.20 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 RZ892B locus 63.30 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 RZ892B locus 63.30 () Automated name-based View Maps
umn97c locus 41.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 UMN97C locus 62.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 UMN97C locus 62.40 () Automated name-based View Maps
aa10.625 locus 101.50 No other positions
amy2d locus 0.00 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.