*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, OxT
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-OxT-1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, OxT [ View Map Set Info ]
Map Name: Oat-OxT-1
Map Start: 0
Map Stop: 72.5
Features by Type:
27 locus
27 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 27.       of 2 | Next
Oat - Oat, OxT - Oat-OxT-1
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
BCD454 locus 30.1 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-1H BCD454 locus 73.54 () Automated name-based View Maps
Wheat ABD - Wheat.Rye recombinant - 1D.1R recombinants BCD454 locus -39.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 BCD454 locus 141 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO3_38 bcd454 locus 33 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO - Oat-2002-KxO_3_38 bcd454 locus 33 (cM) Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H BCD454 locus 73.54 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H BCD454 locus 80.49 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-1H BCD454 locus 72.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 BCD454 locus 141 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-1H BCD454 locus 169.8 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H BCD454 locus 79.2 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_3 BCD454 locus 20 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 BCD454 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_X2 BCD454 locus 6 (cM) Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-1H BCD454 locus 29.1 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 BCD454 locus 32.8 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-1 BCD454 locus 73.54 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xbcd454 locus 50.6 () Automated name-based View Maps
Diploid oat - Oat-2006-LAG211 - Oat-2006-LAG211_11 bcd454 locus 10 () Automated name-based View Maps
CDO1081a locus 72.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO1081A locus 186.7 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 cdo1081a locus 69 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO1081A locus 186.7 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-1 CDO1081a locus 5.2 () Automated name-based View Maps
CDO87 locus 30.1 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo87 locus 53.1 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-5 CDO87 locus 15.55 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO87 locus 141 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO87 locus 141 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-3 CDO87 locus 134.6 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 cdo87 locus 29.5 (cM) Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF cdo87 locus 92 (cM) Automated name-based View Maps
CDO504 locus 28.5 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-5H CDO504 locus 121.33 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H CDO504 locus 138.3 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-5H CDO504 locus 145.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO504 locus 135.8 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H CDO504 locus 137.72 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-5H CDO504 locus 128.29 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-5H CDO504 locus 132.1 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 CDO504 locus 137.72 () Automated name-based View Maps
Consensus - Leymus_2012_TTC2 - Leymus_2012_TTC2_LG5Xm CDO504 locus 114 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO504 locus 135.8 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H CDO504 locus 137.72 () Automated name-based View Maps
Consensus - Leymus_2012_TTC1 - Leymus_2012_TTC1_LG5Xm CDO504 locus 90.43 () Automated name-based View Maps
Barley - Barley, HxT basemap - Hordeum-HxT-base-5H CDO504 locus 161.4 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-5H CDO504 locus 145.3 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H CDO504 locus 218.22 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-5H CDO504 locus 139.4 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-5H CDO504 locus 67.7 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H CDO504 locus 120.3 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H CDO504 locus 30.4 () Automated name-based View Maps
Barley - Barley, Zhedar2, FHB QTL - Hordeum-Zhedar2-FHB-QTL-5H CDO504 locus 125.9 () Automated name-based View Maps
Barley - Barley, VGxTP - Hordeum-Giese2-5H CDO504 locus 110 () Automated name-based View Maps
Consensus - Leymus_2012_TTCC - Leymus_2012_con_LG5Xm CDO504 locus 107 () Automated name-based View Maps
Barley - Barley, PxN - Hordeum-Heun-5H Xcnl.CDO504 locus 218.4 () Automated name-based View Maps
Consensus - Leymus_2012_TTCC - Leymus_2012_con_LG5Ns CDO504 locus 143.44 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5B cdo504 locus 63.4 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-5H CDO504 locus 144.2 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-5H CDO504 locus 132.7 () Automated name-based View Maps
Consensus - Leymus_2012_TTC2 - Leymus_2012_TTC2_LG5Ns CDO504 locus 147.96 () Automated name-based View Maps
Plc locus 56 Barley - Barley consensus 2 - Barley-Consensus2-7H Plc locus 2.3 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H Plc locus -68.4 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-7H Plc locus 13.37 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-7H Plc locus 0.8 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-7H Plc locus 15.84 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-7H Plc locus 15.84 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-7 Plc locus 15.84 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H Plc locus 8.1 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H Plc locus 5.46 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-7H Plc locus 1.3 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-7H Plc locus 0 () Automated name-based View Maps
adh2a locus 0.8 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 adh2a locus 1 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 Adh2A locus 26.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 Adh2A locus 26.6 () Automated name-based View Maps
bcd1734 locus 28.5 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd1734 locus 50.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 BCD1734 locus 135.8 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 BCD1734 locus 57.5 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 bcd1734 locus 108 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 bcd1734 locus 28 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 BCD1734 locus 135.8 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 BCD1734 locus 181.3 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 BCD1734 locus 114 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 BCD1734 locus 130.3 (cM) Automated name-based View Maps
bcd1840b locus 72.5 Oat - Oat, KxO, 2003 - Oat-KxO/2003-32 bcd1840b locus 2.47 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_32 BCD1840B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 BCD1840B locus 53.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 BCD1840B locus 53.9 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_35 bcd1840b locus 0 (cM) Automated name-based View Maps
cdo1373b locus 30.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO1373B locus 147.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO1373B locus 147.3 () Automated name-based View Maps
cdo216a locus 56 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 CDO216A locus 47.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 CDO216A locus 47.8 () Automated name-based View Maps
cdo216c locus 72.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 CDO216C locus 56.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 CDO216C locus 56.5 () Automated name-based View Maps
cdo590a locus 15.2 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 cdo590a locus 15.5 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 CDO590A locus 57 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO590A locus 84.9 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_24 CDO590A locus 78.5 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 CDO590A locus 61.25 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 CDO590A locus 50.4 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 cdo590a locus 70.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO590A locus 84.9 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO24_26_34 cdo590a locus 70 (cM) Automated name-based View Maps
cdo795a locus 7.2 Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 cdo795a locus 61.53 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 cdo795a locus 75.2 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 cdo795a locus 8 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO24_26_34 cdo795a locus 75 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 CDO795A locus 61 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO795A locus 78.1 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_24 CDO795A locus 88.11 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO795A locus 78.1 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 CDO795A locus 40.6 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 CDO795A locus 57.5 (cM) Automated name-based View Maps
isu128b locus 40.7 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 isu128b locus 40 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ISU128B locus 99.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ISU128B locus 99.3 () Automated name-based View Maps
isu35c locus 56 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ISU35C locus 108.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ISU35C locus 108.5 () Automated name-based View Maps
isu59a locus 0 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 isu59a locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ISU59A locus 26.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ISU59A locus 26.6 () Automated name-based View Maps
isu92 locus 23.4 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 isu92 locus 23 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ISU92 locus 89.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ISU92 locus 89.9 () Automated name-based View Maps
oisu1093 locus 4.4 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 oisu1093 locus 4.5 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-E ISU1093 locus 339.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ISU1093 locus 31 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF isu1093 locus 44 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ISU1093 locus 31 () Automated name-based View Maps
oisu1877b locus 28.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ISU1877 locus 127.4 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 oisu1877b locus 28 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ISU1877 locus 127.4 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF isu1877 locus 82 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 ISU1877 locus 110 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-E ISU1877 locus 425 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 ISU1877 locus 114 (cM) Automated name-based View Maps
psr144 locus 2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 PSR144 locus 28.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 PSR144 locus 28.1 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 psr144 locus 2 (cM) Automated name-based View Maps
Wheat U - Ae. umbellulata, A x C - Aeumbellulata-Zhang-6 Xpsr144-6U locus 0 () Automated name-based View Maps
psr153 locus 2.8 Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF psr153 locus 41 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 PSR153 locus 31 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 PSR153 locus 31 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 psr153 locus 3 (cM) Automated name-based View Maps
rz474a locus 13.3 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 RZ474A locus 59.3 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-3 RZ474 locus 85.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 RZ474A locus 59.3 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 rz474a locus 13.5 (cM) Automated name-based View Maps
rz474b locus 30.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 RZ474B locus 141 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 RZ474B locus 141 () Automated name-based View Maps
rz630 locus 28.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 RZ630 locus 135.8 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-3 rz630 locus 112.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 RZ630 locus 135.8 () Automated name-based View Maps
rz912 locus 26.9 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 RZ912 locus 99.3 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-3 rz912 locus 111.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 RZ912 locus 99.3 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 rz912 locus 26.5 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.