*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, OxT
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-OxT-22
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)




Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, OxT [ View Map Set Info ]
Map Name: Oat-OxT-22
Map Start: 0.00
Map Stop: 6.90
Features by Type:
6 locus
6 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 6 of 6.
Oat - Oat, OxT - Oat-OxT-22
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
cdo204 locus 4.50 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A cdo204 locus 39.30 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-2 cdo204 locus 35.70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 CDO204 locus 28.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 CDO204 locus 28.20 () Automated name-based View Maps
cdo534 locus 1.20 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H cdo534 locus 70.40 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H cdo534 locus 61.49 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 CDO534 locus 32.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 CDO534 locus 32.80 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H cdo534 locus 65.00 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H cdo534 locus 70.40 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6D cdo534 locus 46.30 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 cdo534 locus 70.40 () Automated name-based View Maps
isu77b locus 0.00 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 ISU77B locus 32.80 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 ISU77B locus 32.80 () Automated name-based View Maps
oisu2191b locus 0.00 No other positions
psr371a locus 6.90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 PSR371A locus 32.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 PSR371A locus 32.20 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H PSR371 locus 81.36 () Automated name-based View Maps
pic21b locus 6.90 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 PIC21B locus 32.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 PIC21B locus 32.20 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.