*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, OxT
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-OxT-31
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, OxT [ View Map Set Info ]
Map Name: Oat-OxT-31
Map Start: 0
Map Stop: 174
Features by Type:
31 locus
31 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 31.       of 2 | Next
Oat - Oat, OxT - Oat-OxT-31
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
RZ2a locus 174 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 rz2a locus 168 (cM) Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-9 RZ2a locus 19.6 () Automated name-based View Maps
adh2b locus 54.7 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 Adh2B locus 86.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 Adh2B locus 86.6 () Automated name-based View Maps
bcd1643a locus 118.3 Oat - Oat-2016-OxT - Oat-2016-OxT_1a BCD1643A locus 47.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 BCD1643A locus 113.2 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_24 bcd1643a locus 46.9 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 bcd1643a locus 114.5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 BCD1643A locus 111.3 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 bcd1643a locus 53.7 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_24 BCD1643A locus 43.25 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 BCD1643A locus 113.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 BCD1643A locus 111.3 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 BCD1643A locus 76.25 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 BCD1643A locus 41 (cM) Automated name-based View Maps
Sugarcane - Saccharum, Cornell - Saccharum-11 bcd1643a locus 14.3 () Automated name-based View Maps
bcd808c locus 136.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 BCD808C locus 125.8 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-4H bcd808c locus 53.7 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H bcd808c locus 39.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 BCD808C locus 125.8 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 bcd808c locus 131.5 (cM) Automated name-based View Maps
cdo122 locus 108.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 CDO122 locus 81.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO122 locus 111.3 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-4H cdo122 locus 29.8 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 cdo122 locus 105 (cM) Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-4 cdo122 locus 29.76 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_28 cdo122 locus 51 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_7_10_28 CDO122 locus 115 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_14 cdo122 locus 51 (cM) Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-3 cdo122 locus 113.4 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-4H cdo122 locus 30.78 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_7 cdo122 locus 52.8 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_7 cdo122 locus 51 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO122 locus 111.3 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H cdo122 locus 43.4 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_4 CDO122 locus 108.6 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-4H cdo122 locus 31 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-4H cdo122 locus 29.76 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_7 cdo122 locus 51 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_7 cdo122 locus 52.8 (cM) Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-4H cdo122 locus 32.45 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 cdo122 locus 130 () Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_7 cdo122 locus 52.8 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_28 cdo122 locus 51 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 CDO122 locus 126.25 (cM) Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-4H cdo122 locus 30.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 CDO122 locus 81.2 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-4H cdo122 locus 29.76 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H cdo122 locus 33.54 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-4H cdo122 locus 32.3 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-4H cdo122 locus 32.7 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_21 cdo122 locus 51 (cM) Automated name-based View Maps
cdo1326a locus 103.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 CDO1326A locus 78.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 CDO1326A locus 78.3 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 cdo1326a locus 100 (cM) Automated name-based View Maps
cdo241b locus 139.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO241B locus 122.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO241B locus 122.6 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 cdo241b locus 134.5 (cM) Automated name-based View Maps
cdo795b locus 61 Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO795B locus 144 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo795b locus 152 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO795B locus 86.4 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO22_44_18 cdo795b locus 152 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 cdo795b locus 59 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 CDO795B locus 18.75 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 CDO795B locus 48.06 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 cdo795b locus 48.35 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO795B locus 86.4 () Automated name-based View Maps
isu128a locus 135.8 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 isu128a locus 131.5 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 ISU128A locus 125.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 ISU128A locus 125.8 () Automated name-based View Maps
isu35b locus 95.4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 ISU35B locus 111.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 ISU35B locus 111.3 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 isu35b locus 92 (cM) Automated name-based View Maps
isu37a locus 118.3 Oat - Oat-2016-OxT - Oat-2016-OxT_1a ISU37A locus 47.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 ISU37A locus 111.3 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 isu37a locus 114.5 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 ISU37A locus 111.3 () Automated name-based View Maps
isu59b locus 48.3 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 ISU59B locus 78.7 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 isu59b locus 46.5 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 ISU59B locus 78.7 () Automated name-based View Maps
og176a locus 143.9 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 og176a locus 139 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 OG176A locus 140.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 OG176A locus 140.1 () Automated name-based View Maps
og176c locus 143.1 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 og176c locus 138.5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 OG176C locus 140.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 OG176C locus 140.1 () Automated name-based View Maps
oisu1877a locus 133 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 oisu1877a locus 128.5 (cM) Automated name-based View Maps
oisu1961b locus 136.6 No other positions
oisu2013b locus 174 No other positions
psr115 locus 143.1 Barley - Barley, GxH - Hordeum-GxH-5H psr115 locus 258.72 () Automated name-based View Maps
Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-5 Xpsr115(Pk)-5S locus 69.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 PSR115 locus 140.1 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-5H psr115 locus 218.12 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 psr115 locus 138.5 (cM) Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H psr115 locus 78.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 PSR115 locus 140.1 () Automated name-based View Maps
psr922 locus 112.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 PSR922 locus 111.3 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 psr922 locus 109 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 PSR922 locus 111.3 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF psr922 locus 75 (cM) Automated name-based View Maps
rz474c locus 137.6 Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 RZ474C locus 125.8 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 rz474c locus 133 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 RZ474C locus 125.8 () Automated name-based View Maps
umn41 locus 149.3 Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 umn41 locus 10 () Automated name-based View Maps
Oat - Oat-2004-P39xP48 - Oat-2004-P39xP48_4 umn41 locus 14 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 UMN41 locus 191.3 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 UMN41 locus 128.5 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 UMN41 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 UMN41 locus 185.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 UMN41 locus 185.1 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-34 Xumn41 locus 10.1 () Automated name-based View Maps
wg110b locus 149.3 Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 WG110B locus 137.5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 WG110B locus 145.3 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_3 WG110B locus 76.9 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_18 wg110b locus 121 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_break WG110B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_18 wg110b locus 134.6 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 wg110b locus 74 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 WG110B locus 145.3 () Automated name-based View Maps
lsp locus 154.7 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 lsp locus 149.5 (cM) Automated name-based View Maps
Diploid oat - Oat-1999-3815x1994 - Oat-1999-3815x1994_1 Lsp locus 35 (cM) Automated name-based View Maps
Wheat S^l^ - Oat-1999-2630x3815 - Oat-1999-2630x3815_1 Lsp locus 48.9 (cM) Automated name-based View Maps
e35m61-110.t locus 0 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 e35m61-110.t locus 0 (cM) Automated name-based View Maps
e35m61-120.o locus 127.2 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 e35m61-120.o locus 123 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.