*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, OxT
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-OxT-6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, OxT [ View Map Set Info ]
Map Name: Oat-OxT-6
Map Start: 0
Map Stop: 79.2
Features by Type:
11 locus
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
Oat - Oat, OxT - Oat-OxT-6
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
bcd1235c locus 62.6 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_6 bcd1235c locus 60.5 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 BCD1235C locus 17.7 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_18 BCD1235C locus 1.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 BCD1235C locus 65.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 BCD1235C locus 65.3 () Automated name-based View Maps
bcd828b locus 70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 BCD828B locus 62.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 BCD828B locus 62.1 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_18 BCD828B locus 4 () Automated name-based View Maps
bcd855 locus 70 Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 BCD855 locus 17 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 BCD855 locus 61.7 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-7 bcd855 locus 27.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 BCD855 locus 61.7 () Automated name-based View Maps
cdo460a locus 28.4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 CDO460A locus 23.2 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO13 cdo460a locus 39 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 CDO460A locus 54.7 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 CDO460A locus 23.2 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_13 cdo460a locus 38.6 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-13 cdo460a locus 38.6 () Automated name-based View Maps
Oat - Oat-2002-KxO - Oat-2002-KxO_13 cdo460a locus 28 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO13 cdo460a locus 42.71 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_4_12_13 CDO460A locus 32 (cM) Automated name-based View Maps
cdo460b locus 13 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 CDO460B locus 76.6 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_15 CDO460B locus 18.75 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_15 CDO460B locus 19 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-15 cdo460b locus 19.3 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_8 CDO460B locus 33.1 () Automated name-based View Maps
Oat - Oat-2001-KxM - Oat-2001-KxM_15 cdo460b locus 58 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 CDO460B locus 56.1 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 CDO460B locus 76.6 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO15 cdo460b locus 19 (cM) Automated name-based View Maps
cdo470a locus 70 Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 CDO470A locus 60.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 CDO470A locus 60.4 () Automated name-based View Maps
cdo470b locus 79.2 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_6 cdo470b locus 77 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 CDO470B locus 0 (cM) Automated name-based View Maps
isu54b locus 29.6 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_6 isu54b locus 28.5 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 ISU54B locus 33.9 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 ISU54B locus 54.7 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 ISU54B locus 33.9 () Automated name-based View Maps
psr598 locus 38.6 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_6 psr598 locus 37 (cM) Automated name-based View Maps
Wheat ABD - 3A, SxY, QTL - 3A-SxY Xpsr598-3A locus 185 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-3H psr598 locus 84.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 PSR598 locus 38 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 PSR598 locus 38 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_18 PSR598 locus 33.1 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-3H psr598 locus 76.93 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 PSR598 locus 45.9 (cM) Automated name-based View Maps
rz543 locus 27.2 Oat - Oat-2016-OxT - Oat-2016-OxT_18 RZ543 locus 36.7 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-1 rz543 locus 170 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-23 RZ543 locus 32 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-C Xrz543 locus 75.3 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_6 rz543 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 RZ543 locus 56.1 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 RZ543 locus 32 () Automated name-based View Maps
e35m61-238.o locus 0 Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 e35m61-238.o locus 88.6 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_6 e35m61-238.o locus 0 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.