*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rice-Rice, BxOl
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Rice-CU-4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rice - Rice, BxOl [ View Map Set Info ]
Map Name: Rice-CU-4
Map Start: -3
Map Stop: 103
Features by Type:
62 locus
62 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 62.       of 3 | Next
Rice - Rice, BxOl - Rice-CU-4
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Pr locus 45.3 Barley - Barley genes - Hordeum-Genes-2H Pr locus -48 () Automated name-based View Maps
CDO680 locus 20.7 Barley - Barley, GxH - Hordeum-GxH-2H CDO680 locus 219.28 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-2H CDO680 locus 113.6 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H CDO680 locus 140 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-2H CDO680 locus 43.5 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-F CDO0680 locus 50 () Automated name-based View Maps
bcd348 locus 97.6 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_14 bcd348 locus 4.5 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-14 bcd348 locus 4.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 BCD348 locus 114.6 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xbcd348 locus 5.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 BCD348 locus 114.6 () Automated name-based View Maps
cdo244 locus 32.1 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg15 CDO244 locus 53.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-15 CDO244 locus 53.3 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-2H cdo244 locus 107.36 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_11 cdo244 locus 37 (cM) Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H cdo244 locus 122.4 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-2H cdo244 locus 107.36 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-2 cdo244 locus 107.36 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-2H cdo244 locus 107.05 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-11 cdo244 locus 38.9 () Automated name-based View Maps
cdo783 locus 103 Diploid oat - Oat-2006-LAG211 - Oat-2006-LAG211_12 cdo783 locus 0 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-34 cdo783 locus 29.6 () Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_2 cdo783 locus 0 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-2 CDO783b locus 99.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 CDO783 locus 135.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg05 CDO783 locus 135.5 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswI cdo783 locus 22 (cM) Automated name-based View Maps
cdo941 locus 64 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo941A locus 105.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 CDO941 locus 19.6 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-20 cdo941 locus 13.9 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_20 cdo941 locus 13 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 CDO941 locus 19.6 () Automated name-based View Maps
cdo456 locus 100 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-20 cdo456 locus 0 () Automated name-based View Maps
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN20 cdo456 locus 0 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo456 locus 0 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_9 CDO456 locus 24 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_9 CDO456 locus 13.5 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 CDO456 locus 114.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 CDO456 locus 114.6 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-9 cdo456 locus 13.5 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO9 cdo456 locus 14 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_14 cdo456 locus 10 (cM) Automated name-based View Maps
BCD135 locus 20.7 Barley - Barley, BinMap 2005 - Hordeum-Bins-2H BCD135 locus 140.1 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-2H BCD135 locus 124.19 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-7H BCD135 locus 28.91 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-1H BCD135 locus 6.07 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-7H BCD135 locus 8.33 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2B bcd135 locus 74.5 () Automated name-based View Maps
Wheat ABD - 2DL, Augusta x Geneva - Ta-Augusta/Geneva-2D Xbcd135-2D locus 0 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H BCD135 locus 20.9 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-2 BCD135 locus 124.19 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-7H BCD135 locus 22.2 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-2H BCD135 locus 124.19 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-2H BCD135 locus 123.71 () Automated name-based View Maps
CDO36 locus 11.4 Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF cdo36 locus 46 (cM) Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-2H CDO36 locus 202.54 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-2H CDO36 locus 151.4 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-2H CDO036 locus 146.49 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-2H CDO36 locus 265.69 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-2H CDO36 locus 155 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H CDO36 locus 55.1 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-2H CDO36 locus 146.26 () Automated name-based View Maps
Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF cdo36 locus 47.18 (cM) Automated name-based View Maps
CDO216 locus -3 Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 CDO216 locus 70 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 CDO216 locus 147.5 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_break CDO216 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 CDO216 locus 147.5 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xcdo216 locus 117.9 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 CDO216 locus 73.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 CDO216 locus 70 () Automated name-based View Maps
CDO241 locus 90.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 CDO241 locus 124.6 () Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_5 cdo241 locus 6 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 CDO241 locus 32 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 CDO241 locus 124.6 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-E CDO0241 locus 436 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 CDO241 locus 41.6 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF cdo241 locus 101 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 CDO241 locus 91.25 (cM) Automated name-based View Maps
CDO270 locus -3 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A cdo270 locus 26.9 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6D cdo270 locus 42.5 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-E CDO0270 locus 63.8 () Automated name-based View Maps
CDO539X locus 28.3 No other positions
CDO1328 locus -3 Oat - Oat-2009-KxO - Oat-2009-KxO_7_10_28 CDO1328 locus 16 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_18 cdo1328 locus 25.1 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 CDO1328 locus 41.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 CDO1328 locus 41.3 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_18 cdo1328 locus 25 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo1328 locus 53 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 CDO1328 locus 17.4 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_7-10-28 CDO1328 locus 11.25 (cM) Automated name-based View Maps
Diploid oat - Oat-2006-LAG211 - Oat-2006-LAG211_3 cdo1328 locus 7 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H CDO1328 locus 71 () Automated name-based View Maps
CDO1417 locus 43 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo1417 locus 38 () Automated name-based View Maps
d-11 locus 102 No other positions
Gm-2 locus 22.6 No other positions
Ph locus 27 No other positions
Pi-5(t) locus 54.8 No other positions
Pi-? locus 27 No other positions
RG91 locus 70.1 No other positions
RG143 locus 7.9 No other positions
RG163 locus 46.3 No other positions
RG169 locus 0 No other positions
RG214 locus 25.4 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.