*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rice-Rice, BxOl
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Rice-CU-7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rice - Rice, BxOl [ View Map Set Info ]
Map Name: Rice-CU-7
Map Start: -3
Map Stop: 158
Features by Type:
49 locus
49 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 49.       of 2 | Next
Rice - Rice, BxOl - Rice-CU-7
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
CDO385 locus 83.5 Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-5 Xcdo385-5S locus 31.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 CDO385 locus 38.4 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-2 CDO385 locus 148.05 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 CDO385 locus 38.4 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-24 CDO385 locus 30 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_9 CDO385 locus 17 () Automated name-based View Maps
RZ395 locus 48.8 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5A rz395 locus 59.8 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-7 RZ395 locus 100.1 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xrz395 locus 50.8 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5D rz395 locus 60.6 () Automated name-based View Maps
CDO405 locus 20.3 Oat - Oat-2009-KxO - Oat-2009-KxO_50 CDO405 locus 3 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg13 CDO405 locus 17.9 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2D cdo405 locus 33.2 () Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_20 cdo405 locus 0 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-2 Xcdo405 locus 52 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-13 CDO405 locus 17.9 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-8 CDO405 locus 25.6 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_8 CDO405 locus 8.75 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2B cdo405 locus 35.4 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-7 CDO405 locus 122.05 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_25 cdo405 locus 17 (cM) Automated name-based View Maps
CDO497 locus 50.8 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H CDO497 locus 68.1 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H CDO497 locus 63.2 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H CDO497 locus 68.2 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H CDO497 locus 70.82 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-6H CDO497 locus 64.6 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswG cdo497 locus 114 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xcdo497 locus 87 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 CDO497 locus 70.82 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H CDO497 locus 70.82 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-6H CDO497 locus 67.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 CDO497 locus 14.7 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H CDO497 locus -4.5 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H CDO497 locus 61.9 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H CDO497 locus 61.36 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H CDO497 locus 60.7 () Automated name-based View Maps
bcd855 locus 27.7 Oat - Oat, OxT - Oat-OxT-6 bcd855 locus 70 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg23 BCD855 locus 61.7 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_6 BCD855 locus 17 (cM) Automated name-based View Maps
cdo407 locus 89.2 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_2 cdo407 locus 57 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_6 CDO407 locus 28 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_2 CDO407 locus 63.7 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg12 CDO407 locus 58.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-6 cdo407 locus 24.9 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo407 locus 34.6 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-2 cdo407 locus 60.5 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_6 CDO407 locus 71.25 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_5 CDO407 locus 26.4 () Automated name-based View Maps
Acp-4 locus 139.8 No other positions
BCD1086 locus 27.7 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xbcd1086 locus 8.2 () Automated name-based View Maps
CALb locus -3 No other positions
CDO38 locus 8.2 Diploid oat - Diploid Oat, AFLP - Avena-Yu-F Xcdo38 locus 383.2 () Automated name-based View Maps
CDO59 locus 59.9 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-4H CDO059 locus 43.41 () Automated name-based View Maps
CDO418 locus 16.7 No other positions
CDO533 locus 85.9 No other positions
Mal-2 locus 129 No other positions
Rc locus 102.5 No other positions
RG4A locus 50.8 No other positions
RG30 locus 92.5 No other positions
RG128 locus 146.4 No other positions
RG165 locus 155.3 No other positions
RG351 locus 0 No other positions
RG409X locus 10.7 No other positions
RG417 locus 139.8 No other positions
RG477 locus 104 No other positions
RG528 locus 137.1 No other positions
RG556B locus 158 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.