*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rice-Rice, BxOl
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Rice-CU-8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rice - Rice, BxOl [ View Map Set Info ]
Map Name: Rice-CU-8
Map Start: -3
Map Stop: 96.4
Features by Type:
31 locus
31 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 31.       of 2 | Next
Rice - Rice, BxOl - Rice-CU-8
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
bcd147 locus 30.4 Barley - Barley, BinMap 2005 - Hordeum-Bins-7H bcd147 locus 79 () Automated name-based View Maps
Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-3 Xbcd147-3S locus 28.3 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3B bcd147 locus 67.3 () Automated name-based View Maps
Wheat ABD - 3B Physical - Physical-3B bcd147 locus 90.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 BCD147 locus 63.5 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bcd147 locus 91.3 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-1H bcd147 locus 107.06 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-3H bcd147 locus 178.41 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg12 BCD147 locus 63.5 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-7H bcd147 locus 101.7 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-8 bcd147 locus 111.7 () Automated name-based View Maps
CDO595 locus 77.5 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_2 cdo595 locus 43 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 CDO595 locus 58.5 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-2 CDO595 locus 45.5 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-7H CDO595 locus 77 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-6 CDO595 locus 24.9 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-7H CDO595 locus 82 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-7H CDO595 locus 16.35 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-7A cdo595 locus 78.7 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_6 CDO595 locus 71.25 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_6 CDO595 locus 71.25 (cM) Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-1 CDO595 locus 113.15 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_2 CDO595 locus 49.4 (cM) Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H CDO595 locus 2.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg12 CDO595 locus 58.5 () Automated name-based View Maps
Barley - Barley, PxN - Hordeum-Heun-7H Xcnl.CDO595 locus 114.6 () Automated name-based View Maps
Oat - Oat-1997-64Lines - Oat-1997-64Lines_6 cdo595 locus 71.8 (cM) Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H CDO595 locus 73.7 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_6 cdo595 locus 84.5 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_5 CDO595 locus 26.4 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_6 CDO595 locus 28 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 7A cdo595 locus 31.6 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-7H CDO595 locus 120.08 () Automated name-based View Maps
CDO99 locus 93.5 Barley - Barley consensus 2 - Barley-Consensus2-1H CDO99 locus 50.3 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-1H CDO99 locus 59.1 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-1H CDO99 locus 31.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO99 locus 88.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 CDO99 locus 41 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO99 locus 88.7 () Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-1H CDO99 locus 40.3 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 CDO99 locus 14.9 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H CDO99 locus -9.5 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-1H CDO99 locus 31.6 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H CDO099 locus 42.87 () Automated name-based View Maps
Barley - Barley, Cali-sib x BowmanBC, QTL - Hordeum-CxB-1H CDO99 locus 36.6 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-1 CDO99 locus 143.85 () Automated name-based View Maps
Barley - Barley, HxM/QTL - Hordeum-HxM-base-1H CDO99 locus 21.5 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H CDO99 locus 49.01 () Automated name-based View Maps
CDO464 locus 73.7 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-7H CDO464 locus 88.89 () Automated name-based View Maps
Barley - Barley, PxN - Hordeum-Heun-7H Xcnl.CDO464 locus 108.1 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-7H CDO464 locus 88.89 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H CDO464 locus 2 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-7H CDO464 locus 77.1 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-7H CDO464 locus 75.25 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-7 CDO464 locus 88.89 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H CDO464 locus 76.2 () Automated name-based View Maps
Amy3D locus 71.1 No other positions
Amy3E locus 71.1 No other positions
CDO116 locus 78.4 No other positions
CDO192 locus 36.2 No other positions
fgr locus 61 No other positions
Pi-zh(t) locus 40 No other positions
RG20 locus 11.5 No other positions
RG28 locus 58 No other positions
RG29B locus 0 No other positions
RG136 locus 82.9 No other positions
RG598X locus 90.7 No other positions
RG978 locus 53.1 No other positions
RG1034 locus 48.3 No other positions
RZ28 locus 78.4 No other positions
RZ66 locus 77.5 No other positions
RZ143 locus 5 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-7H RZ143 locus 88.68 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-7H RZ143 locus 75.11 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-7H RZ143 locus 77.1 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-24 rz143b locus 12.7 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-7H RZ143 locus 88.68 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-7 RZ143 locus 88.68 () Automated name-based View Maps
RZ323 locus 42 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H RZ323 locus 84.2 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H RZ323 locus 75.22 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 RZ323 locus 84.2 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H RZ323 locus 84.2 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H RZ323 locus 80.6 () Automated name-based View Maps
RZ562 locus 29.1 No other positions
RZ572 locus 82.9 No other positions
RZ597 locus 10.1 No other positions
RZ617A locus 45.9 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.