*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rice-Rice, BxOl
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Rice-CU-9
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rice - Rice, BxOl [ View Map Set Info ]
Map Name: Rice-CU-9
Map Start: 0.00
Map Stop: 89.00
Features by Type:
29 locus
29 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 29.       of 2 | Next
Rice - Rice, BxOl - Rice-CU-9
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
RZ596 locus 68.50 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xrz596 locus 108.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 RZ596 locus 74.80 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-7 RZ596 locus 56.20 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 RZ596 locus 74.80 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-15 RZ596 locus 78.10 () Automated name-based View Maps
bcd1087 locus 33.60 Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 BCD1087 locus 101.60 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-4H BCD1087a locus 125.80 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-2 bcd1087 locus 16.50 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 BCD1087 locus 101.60 () Automated name-based View Maps
bcd926 locus 57.50 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H bcd926 locus 142.37 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 BCD926 locus 67.60 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-15 bcd926 locus 73.50 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H bcd926 locus 81.94 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 bcd926 locus 81.94 () Automated name-based View Maps
Barley - Barley, Pilot OPA1, Consensus - Hordeum-PilotOPA1-5H bcd926 locus 84.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 BCD926 locus 67.60 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H bcd926 locus 94.70 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5A bcd926 locus 35.70 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H bcd926 locus 79.00 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H bcd926 locus 81.94 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-5H bcd926 locus 79.52 () Automated name-based View Maps
Amy3A locus 44.70 No other positions
Amy3B locus 44.70 No other positions
Amy3C locus 44.70 No other positions
aTUB locus 13.40 No other positions
CDO388 locus 23.70 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A cdo388 locus 44.90 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2B cdo388 locus 52.20 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B cdo388 locus 8.40 () Automated name-based View Maps
Wheat D - 1DS, Ae. tauschii - 1DS, Ae. tauschii Xcdo388-1D locus 33.00 () Automated name-based View Maps
CDO590 locus 18.50 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xcdo590 locus 56.30 () Automated name-based View Maps
CYC1 locus 86.80 No other positions
R45s locus 8.80 No other positions
RG125 locus 68.50 No other positions
RG358 locus 89.00 No other positions
RG386 locus 69.00 No other positions
RG451 locus 76.00 No other positions
RG563 locus 51.10 No other positions
RG570 locus 69.50 No other positions
RG667 locus 65.40 No other positions
RG757 locus 15.60 No other positions
RZ12 locus 62.30 No other positions
RZ206 locus 38.40 No other positions
RZ228 locus 55.10 No other positions
RZ404X locus 82.70 No other positions
RZ422 locus 44.70 No other positions
RZ456 locus 65.40 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.