*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye_2009_consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Rye-2009-Consensus-2R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye_2009_consensus [ View Map Set Info ]
Map Name: Rye-2009-Consensus-2R
Map Start: 2.9
Map Stop: 71.5
Features by Type:
67 locus
67 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 67.       of 3 | Next
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr489_Ss2_S locus 2.9 No other positions
Xpsr143 locus 2.9 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr143 locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr143 locus 72.6 () Automated name-based View Maps
Xpsr112_L locus 2.9 No other positions
Xpsr107 locus 2.9 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr107 locus -35 () Automated name-based, Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xpsr107 locus 85.7 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr107 locus 0 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr107 locus 3.1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr107 locus -1.67 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A Xpsr107 locus 59 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr107 locus 72.6 () Automated name-based View Maps
Xcdo718 locus 4.5 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xcdo718 locus 23.5 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3B Xcdo718 locus 58 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xcdo718 locus 3.1 () Automated name-based View Maps
Xrsq805_Embp.2 locus 5.9 No other positions
Xcdo795 locus 7 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 Xcdo795 locus 14 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 Xcdo795 locus 14 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 Xcdo795 locus 14 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_1 Xcdo795 locus 14 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo795 locus 33.6 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 Xcdo795 locus 14 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 Xcdo795 locus 14 (cM) Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xcdo795 locus 6.8 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_22 Xcdo795 locus 14 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4B Xcdo795 locus 16 () Automated name-based View Maps
Xmsh3 locus 7 Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xmsh3 locus 48.4 () Automated name-based View Maps
Xbcd1086 locus 7 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xbcd1086 locus 8.2 () Automated name-based View Maps
Xbcd292 locus 7 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xbcd292 locus 8.2 () Automated name-based View Maps
Xpsr130 locus 7.6 Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr130 locus 45.8 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr130 locus 67.5 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr130 locus 41 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr130 locus -5.6 () Automated name-based View Maps
Xcmwg699 locus 7.6 Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xcmwg699 locus 50.5 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xcmwg699 locus 53.3 () Automated name-based View Maps
Xbzh834_Per locus 8.7 Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xbzh834_Per locus 49.3 () Automated name-based View Maps
Xiag33 locus 10.2 Rye - Rye, Hannover - Secale-Wricke-2R Xiag33 locus 89.1 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xiag33 locus 49.2 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xiag33 locus 47.5 () Automated name-based View Maps
Xiag233 locus 10.2 Rye - Rye, Hannover - Secale-Wricke-2R Xiag233 locus 102.4 () Automated name-based View Maps
Xpsr549 locus 11.3 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr549 locus 72.6 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr549 locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr549 locus -16 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr549 locus 61.8 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr549 locus 2 () Automated name-based View Maps
Xcdo1328b locus 12.6 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xcdo1328b locus 14.1 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-2 CDO1328b locus 88.1 () Automated name-based View Maps
Xbcd880 locus 13.3 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xbcd880 locus 14.1 () Automated name-based View Maps
XA5530 locus 15.4 No other positions
Xrsq805_Embp.1 locus 16.8 No other positions
Xiag167 locus 18.5 Rye - Rye, P87 x P105 - Secale-PxP-2 Xiag167 locus 64.4 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xiag167 locus 61 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xiag167 locus 117.5 () Automated name-based View Maps
Xpsr386 locus 20.6 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr386 locus 21.7 () Automated name-based View Maps
Xmwg858 locus 21.2 Rye - Rye, P87 x P105 - Secale-PxP-2 Xmwg858 locus 24.3 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xmwg858 locus -27.6 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-2 Xmwg858 locus 56 () Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H Xmwg858 locus 21.5 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xmwg858 locus 24.7 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xmwg858 locus 22.1 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xmwg858 locus -37.4 () Automated name-based View Maps
XnabgmpD17 locus 23 No other positions
Xbcd120 locus 26.8 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xbcd120 locus 28 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D Xbcd120 locus 54 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.