*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye_2009_consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Rye-2009-Consensus-2R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye_2009_consensus [ View Map Set Info ]
Map Name: Rye-2009-Consensus-2R
Map Start: 2.9
Map Stop: 71.5
Features by Type:
67 locus
67 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 67.       Previous | of 3 | Next
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
R21800 locus 28.2 No other positions
Xpsr540 locus 29.2 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr540 locus 99.9 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr540 locus 130.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr540 locus 24.7 () Automated name-based View Maps
Xpsr900 locus 29.2 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr900 locus -29.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr900 locus 31.9 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr900 locus 33.4 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr900 locus 30.1 () Automated name-based View Maps
Xbcd111 locus 31.4 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xbcd111 locus 32.4 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D Xbcd111 locus 55 () Automated name-based View Maps
Xpsr932 locus 32.4 Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr932 locus 75 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr932 locus 79.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr932 locus 23.3 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr932 locus 98.6 () Automated name-based View Maps
Xbcd102 locus 35.1 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D Xbcd102 locus 32 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xbcd102 locus 36.1 () Automated name-based View Maps
Xbcd266 locus 36.4 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H XBCD266 locus 93.2 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B XBCD266 locus 17.4 () Automated name-based View Maps
Barley - Barley, TxB - Hordeum-Laurie4-2H XBCD266 locus 51.9 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-2 XBCD266 locus 70 () Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H XBCD266 locus 154.1 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H XBCD266 locus 151.2 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H XBCD266 locus 136.2 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R XBCD266 locus 79.7 () Automated name-based View Maps
Xiag240a locus 36.4 Rye - Rye, Hannover - Secale-Wricke-2R Xiag240a locus 9.9 () Automated name-based View Maps
Xscg46 locus 43.2 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xscg46 locus 47.2 () Automated name-based View Maps
Xpsr331 locus 45 Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr331 locus 128.7 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr331 locus 9.6 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xpsr331 locus 67.5 () Automated name-based View Maps
Barley - Barley, TxB - Hordeum-Laurie4-2H Xpsr331 locus 31.3 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr331 locus 85.5 () Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H Xpsr331 locus 127.5 () Automated name-based View Maps
Xpsr109 locus 45 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr109 locus -43.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr109 locus -3.08 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr109 locus 73.1 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr109 locus 19.5 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr109 locus 20.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr109 locus -2.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr109 locus 18.1 () Automated name-based View Maps
Xpsr131 locus 45 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_16 Xpsr131 locus 109.5 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr131 locus -3.08 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr131 locus 67.5 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr131 locus 43.9 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D Xpsr131 locus 7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr131 locus -64 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr131 locus -5.3 () Automated name-based View Maps
Xscg60.2 locus 45.8 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xscg60.2 locus 48.2 () Automated name-based View Maps
Xcmwg720 locus 45.8 Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xcmwg720 locus 91 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xcmwg720 locus 94.7 () Automated name-based View Maps
Xpsr666 locus 46.5 Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr666 locus 3.9 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr666 locus -3.08 () Automated name-based, Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xpsr666 locus 0 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr666 locus 21.8 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xpsr666 locus -42.6 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_13 Xpsr666 locus 28 (cM) Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr666 locus 5.4 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr666 locus 18.1 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr666 locus -31.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr666 locus -92 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H Xpsr666 locus 17.7 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr666 locus -43.2 () Automated name-based View Maps
XksuF41 locus 47.4 Barley - Barley consensus - Barley-Consensus-2H ksuF41 locus 59.8 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H ksuF41 locus 162 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-2H ksuF41 locus 187.84 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-2H ksuF41 locus 137.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D XksuF41 locus 4.98 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD XksuF41 locus 95 () Automated name-based, Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-2H ksuF41 locus 235.51 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A XksuF41 locus 103 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B XksuF41 locus 104 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-2H ksuF41 locus 149.4 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R XksuF41 locus 92.6 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-2H ksuF41 locus 192.17 () Automated name-based View Maps
Xcmwg660 locus 47.4 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B Xcmwg660 locus 126 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xcmwg660 locus 95.3 () Automated name-based View Maps
Xiag61a locus 47.4 Rye - Rye, Hannover - Secale-Wricke-2R Xiag61a locus 12.5 () Automated name-based View Maps
XScm43 locus 50.1 Rye - Rye, P87 x P105, update - Secale-PxP-update-2R XScm43 locus 46.3 () Automated name-based View Maps
XSi_1 locus 51.2 No other positions
Xpsr687 locus 53.4 Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr687 locus 135.7 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr687 locus 102.3 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr687 locus 98.3 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-6 Xpsr687 locus 114 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr687 locus 76.3 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr687 locus 97 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr687 locus 171.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr687 locus 91 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr687 locus 3.3 () Automated name-based View Maps
Xcdo78 locus 54.4 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo78 locus 36.7 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xcdo78 locus 56.2 () Automated name-based View Maps
XEst_6 locus 55.1 No other positions
Xpsr151 locus 56 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr151 locus 73.7 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr151 locus 57.8 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr151 locus 0.8 () Automated name-based View Maps
Xpsr390 locus 56 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr390 locus 73.7 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr390 locus 0.8 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.