*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye_2009_consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Rye-2009-Consensus-4R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye_2009_consensus [ View Map Set Info ]
Map Name: Rye-2009-Consensus-4R
Map Start: 1.1
Map Stop: 148.7
Features by Type:
85 locus
85 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 85.       Previous | of 4 | Next
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbcd327 locus 53.9 Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 Xbcd327 locus 28.24 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-22 Xbcd327 locus 4.1 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 Xbcd327 locus 7.48 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 Xbcd327 locus 0 (cM) Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A Xbcd327 locus 0 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_22 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-22 Xbcd327 locus 4.1 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-4 Xbcd327 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D Xbcd327 locus 64 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 Xbcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-22 Xbcd327 locus 8 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_1 Xbcd327 locus 24.3 (cM) Automated name-based View Maps
Xiag115 locus 55 Rye - Rye, P87 x P105 - Secale-PxP-4 Xiag115 locus 61.4 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xiag115 locus 55.1 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-4 Xiag115 locus 61 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-4R Xiag115 locus 27.9 () Automated name-based View Maps
Xiag32 locus 55.5 Rye - Rye, Hannover - Secale-Wricke-A Xiag32 locus 22.5 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-4R Xiag32 locus 24.8 () Automated name-based View Maps
Xbcd385 locus 55.5 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xbcd385 locus -41 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xbcd385 locus 41 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd385 locus 105.8 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_16-23 Xbcd385 locus 22.5 (cM) Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-4 Xbcd385 locus 4.4 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-23 Xbcd385 locus 35 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xbcd385 locus 113.2 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-6 Xbcd385 locus 114 () Automated name-based View Maps
Xwg9 locus 55.5 Rye - Rye, ExR - Secale-ExR-4 Xwg9 locus 4.4 () Automated name-based View Maps
Xuah82C locus 55.5 Rye - Rye, ExR - Secale-ExR-4 Xuah82C locus 4.4 () Automated name-based View Maps
Xops19B locus 57.2 Rye - Rye, ExR - Secale-ExR-4 OpS19B locus 4.4 () Automated name-based View Maps
Xiag73 locus 59.5 Rye - Rye, Hannover - Secale-Wricke-4R Xiag73 locus 32.4 () Automated name-based View Maps
Xbgl485_Ger.2 locus 59.5 No other positions
Xbgl485_Ger.1 locus 60.5 No other positions
O20400 locus 63.7 No other positions
Xuah82 locus 65.9 Rye - Rye, UC90 x E-line - Secale-UxE-4 Xuah82 locus 49.7 () Automated name-based View Maps
Xiag68 locus 68.1 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xiag68 locus 59.7 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xiag68 locus 49.2 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-4 Xiag68 locus 82 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xiag68 locus 145.8 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xiag68 locus 47.5 () Automated name-based View Maps
Xpsr584_S locus 70 No other positions
Xnpi253 locus 70 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xnpi253 locus 1.4 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-4R Xnpi253 locus 64.4 () Automated name-based View Maps
Xpsr681 locus 70.7 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr681 locus -0.3 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-4R Xpsr681 locus 62.6 () Automated name-based View Maps
Xpsr152_L locus 71.5 No other positions
XksuD15 locus 72.1 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R XksuD15 locus 1.4 () Automated name-based View Maps
Xscg206 locus 72.1 Rye - Rye, UC90 x E-line - Secale-UxE-4 Xscg206 locus 44 () Automated name-based View Maps
Xmwg89 locus 73.6 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xmwg89 locus -67 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-7H Xmwg89 locus -51.3 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xmwg89 locus 33 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xmwg89 locus 76.5 () Automated name-based View Maps
Xphp10005 locus 73.6 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xphp10005 locus 2.7 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-4R Xphp10005 locus 65.9 () Automated name-based View Maps
Xpsr490_Ss1 locus 74.6 No other positions
Xpsr662 locus 75.2 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-4R Xpsr662 locus 67.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr662 locus 4.2 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-4 Xpsr662 locus 92.9 () Automated name-based View Maps
O2H1100 locus 77.5 No other positions
Xbcd1230u locus 77.5 Rye - Rye, UC90 x E-line - Secale-UxE-4 Xbcd1230u locus 89.1 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.