*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye_2009_consensus
(Reference Set)
Rye-Rye, ExR
Min.
Correspondences
Align Vertically
Stack
Maps Rye-2009-Consensus-5R Secale-ExR-5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye_2009_consensus [ View Map Set Info ]
Map Name: Rye-2009-Consensus-5R
Map Start: 1.30
Map Stop: 118.10
Features by Type:
78 locus
78 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 78.       of 4 | Next
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr628 locus 1.30 Rye - Rye, Hannover - Secale-Wricke-5R Xpsr628 locus 5.40 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr628 locus 0.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr628 locus 56.10 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr628 locus 0.90 () Automated name-based, Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xpsr628 locus 6.20 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr628 locus 0.00 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-5 Xpsr628 locus 58.50 () Automated name-based View Maps
Xuah58B locus 1.30 Rye - Rye, ExR - Secale-ExR-5 Xuah58B locus 10.10 () Automated name-based View Maps
Xwg364A locus 1.30 Rye - Rye, ExR - Secale-ExR-5 Xwg364A locus 6.20 () Automated name-based View Maps
Xcdo419C locus 1.30 Barley - Barley, VGxTP - Hordeum-Giese2-5H CDO419c locus 159.00 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xcdo419C locus 8.70 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H CDO419c locus 165.00 () Automated name-based View Maps
Xpsr929_S locus 1.30 No other positions
Xpsr326 locus 1.30 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr326 locus 0.00 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr326 locus 0.00 () Automated name-based View Maps
Wheat A - 5AS, T.m. G3116 x DV92 - 5AS, T.m. G3116 x DV92 Xpsr326 locus 0.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr326 locus 52.30 () Automated name-based View Maps
Wheat ABD - 5DS, CS x RL5406 - 5DS, CS x RL5406 Xpsr326 locus 0.00 () Automated name-based View Maps
Xscb17a locus 1.30 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xscb17a locus 52.90 () Automated name-based View Maps
XScm138a locus 1.30 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xscm138a locus 52.60 () Automated name-based View Maps
Xksu26 locus 1.30 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xksu26 locus 2.78 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xksu26 locus 56.10 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xksu26 locus 0.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xksu26 locus 31.00 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-5D Xksu26 locus 15.65 () Automated name-based View Maps
Xpsr109b locus 1.30 Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr109b locus 2.30 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr109b locus 53.20 () Automated name-based View Maps
Xpsr120.1 locus 1.90 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr120.1 locus 29.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr120.1 locus 0.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr120.1 locus 94.50 () Automated name-based View Maps
Xpsr100 locus 1.90 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr100 locus 56.10 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr100 locus 0.00 () Automated name-based View Maps
Xpsr860_Uba_L locus 1.90 No other positions
Xpsr360 locus 1.90 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr360 locus 0.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr360 locus 53.80 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr360 locus 56.10 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-5R Xpsr360 locus 0.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr360 locus 0.00 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr360 locus 4.00 () Automated name-based View Maps
Xmsh6 locus 1.90 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xmsh6 locus 53.80 () Automated name-based View Maps
Xbcd1130 locus 2.60 Oat - Oat, KxO - Oat-KxO-30 Xbcd1130 locus 2.90 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xbcd1130 locus 55.30 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xbcd1130 locus 7.70 () Automated name-based View Maps
Xcdo419B locus 3.40 Barley - Barley consensus 2 - Barley-Consensus2-3H CDO419B locus 72.00 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 CDO419B locus 32.00 (cM) Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-3H CDO419B locus 101.00 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 CDO419B locus 41.80 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H CDO419B locus 66.80 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xcdo419B locus 7.70 () Automated name-based View Maps
Xcdo687 locus 3.40 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo687 locus -48.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xcdo687 locus 7.70 () Automated name-based View Maps
Xpsr574 locus 3.40 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xpsr574 locus 51.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr574 locus 1.30 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr574 locus 25.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr574 locus 57.70 () Automated name-based View Maps
Xiag220 locus 3.40 Rye - Rye, Hannover - Secale-Philipp-1R Xiag220 locus 125.70 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xiag220 locus 55.70 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xiag220 locus 7.30 () Automated name-based View Maps
Xcdo786A locus 3.40 Rye - Rye, ExR - Secale-ExR-5 Xcdo786A locus 8.70 () Automated name-based View Maps
Xiag88 locus 6.30 Rye - Rye, Hannover - Secale-Wricke-5R Xiag88 locus 4.50 () Automated name-based View Maps
Xbcd351 locus 6.30 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xbcd351 locus 60.00 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xbcd351 locus 27.10 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xbcd351 locus 10.10 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xbcd351 locus 4.23 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd351 locus 105.80 () Automated name-based View Maps
Xscb169 locus 8.20 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xscb169 locus 61.30 () Automated name-based View Maps
Xwg380 locus 9.40 Rye - Rye, ExR - Secale-ExR-5 Xwg380 locus 19.90 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xwg380 locus 30.90 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xwg380 locus 97.00 () Automated name-based, Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xwg380 locus 50.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7A Xwg380 locus 194.00 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.