*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye_2009_consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Rye-2009-Consensus-5R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye_2009_consensus [ View Map Set Info ]
Map Name: Rye-2009-Consensus-5R
Map Start: 1.3
Map Stop: 118.1
Features by Type:
78 locus
78 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 78.       Previous | of 4 | Next
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xcdo749 locus 9.4 Wheat A - 5AS, T.m. G3116 x DV92 - 5AS, T.m. G3116 x DV92 Xcdo749 locus 0 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo749 locus 0 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-5 Xcdo749 locus 38 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo749 locus 55.3 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xcdo749 locus -6.8 () Automated name-based View Maps
Barley - 5HS, Steptoe x Morex - 5HS, Steptoe x Morex Xcdo749 locus -5.9 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xcdo749 locus 0 () Automated name-based View Maps
Ph­2 locus 9.4 No other positions
Xksu8 locus 11.4 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xksu8 locus 71.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xksu8 locus 53 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xksu8 locus 3.51 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xksu8 locus 13.2 () Automated name-based View Maps
Xuah58A locus 12.1 Rye - Rye, ExR - Secale-ExR-5 Xuah58A locus 8.7 () Automated name-based View Maps
Est5 locus 17 Rye - Rye, Hannover - Secale-Wricke-5R Est5 locus 20.2 () Automated name-based View Maps
Barley - Barley, AxK - Hordeum-AxK-7H Est5 locus 10.9 () Automated name-based View Maps
Barley - Barley, VGxTP - Hordeum-Giese2-7H Est5 locus 54 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-7H Est5 locus 24.7 () Automated name-based View Maps
Barley - Barley, VGxA - Hordeum-Giese1-7H Est5 locus 25 () Automated name-based View Maps
Xwaxc4_Acl1.2 locus 19 No other positions
Xbcd508 locus 20.4 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xbcd508 locus 4.23 () Automated name-based, Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xbcd508 locus 31.1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xbcd508 locus 86 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xbcd508 locus 4.46 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xbcd508 locus 38 () Automated name-based View Maps
Xibf-R1 locus 21.2 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Ibf-R1 locus 99.5 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Ibf-R1 locus 81.2 () Automated name-based View Maps
Xpsr911 locus 21.2 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr911 locus 83.8 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xpsr911 locus 63 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr911 locus 48 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr911 locus 23 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr911 locus 78.8 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr911 locus 89.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr911 locus 30.5 () Automated name-based View Maps
Xpsr120.2 locus 24.2 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xpsr120.2 locus 84 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr120.2 locus 73 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr120.2 locus 56.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr120.2 locus 36.8 () Automated name-based View Maps
Xcdo456 locus 27.9 Rye - Rye, UC90 x E-line - Secale-UxE-5 Xcdo456 locus 65.1 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_14 Xcdo456 locus 10 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo456 locus 0 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_9 Xcdo456 locus 13.5 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-9 Xcdo456 locus 16 () Automated name-based View Maps
Xbcd451 locus 29.1 Rye - Rye, ExR - Secale-ExR-5 Xbcd451 locus 38.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D Xbcd451 locus 121 () Automated name-based View Maps
Xmwg2062b locus 29.1 Rye - Rye, P87 x P105 - Secale-PxP-5 Xmwg2062b locus 35 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xmwg2062b locus 90.6 () Automated name-based View Maps
Xbcd147e locus 29.7 Rye - Rye, UC90 x E-line - Secale-UxE-5 Xbcd147e locus 63.5 () Automated name-based View Maps
XIbf_1 locus 30.5 No other positions
Xpsr637 locus 31.7 Rye - Rye, ExR - Secale-ExR-5 Xpsr637 locus 38.3 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr637 locus 4.63 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr637 locus 52 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr637 locus 73 () Automated name-based, Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_32 Xpsr637 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Xpsr637 locus 0 (cM) Automated name-based View Maps
Xcdo1417A locus 35 Rye - Rye, ExR - Secale-ExR-5 Xcdo1417A locus 38.3 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-2 CDO1417a locus 41.45 () Automated name-based View Maps
Xmwg989 locus 35 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xmwg989 locus 97 () Automated name-based View Maps
Xbcd9 locus 36.9 Rye - Rye, ExR - Secale-ExR-5 Xbcd9 locus 41.8 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xbcd9 locus 52.2 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xbcd9 locus 79 () Automated name-based View Maps
Xwg644 locus 39.7 Rye - Rye, P87 x P105 - Secale-PxP-5 Xwg644 locus 46.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xwg644 locus 5.14 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xwg644 locus 109.1 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xwg644 locus 102.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xwg644 locus 75 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xwg644 locus 67.1 () Automated name-based View Maps
Xmwg2225 locus 40.4 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xmwg2225 locus 10.4 () Automated name-based View Maps
Xiag170 locus 41.2 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xiag170 locus 105 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xiag170 locus 49.1 () Automated name-based View Maps
Xpsr426 locus 43.1 Rye - Rye, UC90 x E-line - Secale-UxE-5 Xpsr426 locus 63.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr426 locus 119.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr426 locus 61.3 () Automated name-based View Maps
Xuah105 locus 45.4 Rye - Rye, ExR - Secale-ExR-5 Xuah105 locus 36.3 () Automated name-based View Maps
Est4 locus 46.9 Barley - Barley, AxK - Hordeum-AxK-3H Est4 locus 155 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-3H Est4 locus 177.7 () Automated name-based View Maps
Barley - Barley, VGxA - Hordeum-Giese1-3H Est4 locus 10 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Est4 locus 112.2 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.