*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, Ds2 x RxL10, RAPD
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-DxR-RAPD-2R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, Ds2 x RxL10, RAPD [ View Map Set Info ]
Map Name: Secale-DxR-RAPD-2R
Map Start: 0
Map Stop: 141.6
Features by Type:
44 locus
44 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 44.       of 2 | Next
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr112 locus 72.6 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr112 locus 0 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D Xpsr112 locus 7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr112 locus 0.83 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr112 locus 17 () Automated name-based, Automated name-based View Maps
Xpsr131 locus 67.5 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_16 Xpsr131 locus 109.5 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr131 locus -64 () Automated name-based, Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr131 locus 43.9 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr131 locus 45 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr131 locus -5.3 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D Xpsr131 locus 7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr131 locus -3.08 () Automated name-based, Automated name-based View Maps
Xpsr109 locus 18.1 Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr109 locus -2.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr109 locus 73.1 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr109 locus 19.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr109 locus -3.08 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr109 locus -43.2 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr109 locus 20.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr109 locus 45 () Automated name-based View Maps
Xpsr130 locus 67.5 Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr130 locus 41 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr130 locus -5.6 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr130 locus 45.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr130 locus 7.6 () Automated name-based View Maps
Xpsr102 locus 75.3 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr102 locus 4.2 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr102 locus 48.4 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr102 locus 78.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr102 locus 2.3 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xpsr102 locus 94.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr102 locus 2.78 () Automated name-based, Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr102 locus 86.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr102 locus 58.9 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr102 locus 49.7 () Automated name-based View Maps
Xpsr107 locus 72.6 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr107 locus 2.9 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr107 locus -35 () Automated name-based, Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr107 locus 3.1 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xpsr107 locus 85.7 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr107 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr107 locus -1.67 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A Xpsr107 locus 59 () Automated name-based View Maps
Xpsr388 locus 73.7 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr388 locus 0.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr388 locus 47 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr388 locus 56 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A Xpsr388 locus 63 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr388 locus 2.78 () Automated name-based, Automated name-based View Maps
Xpsr666 locus 18.1 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_13 Xpsr666 locus 28 (cM) Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr666 locus 46.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr666 locus -92 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr666 locus -43.2 () Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H Xpsr666 locus 17.7 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr666 locus 5.4 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr666 locus 21.8 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr666 locus 3.9 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xpsr666 locus -42.6 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr666 locus -3.08 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr666 locus -31.8 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xpsr666 locus 0 () Automated name-based View Maps
Xpsr934 locus 130.4 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A Xpsr934 locus 86 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr934 locus 68 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr934 locus 69.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr934 locus 54.2 () Automated name-based View Maps
Xpsr900 locus 31.9 Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr900 locus 30.1 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr900 locus 33.4 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr900 locus -29.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr900 locus 29.2 () Automated name-based View Maps
Xpsr932 locus 98.6 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr932 locus 23.3 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr932 locus 32.4 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr932 locus 79.1 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr932 locus 75 () Automated name-based View Maps
Xpsr609 locus 130.4 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr609 locus 72.9 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr609 locus 109.7 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr609 locus 108.7 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr609 locus 60.9 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr609 locus 54.2 () Automated name-based View Maps
Xpsr687 locus 76.3 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr687 locus 171.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr687 locus 91 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr687 locus 98.3 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr687 locus 53.4 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr687 locus 3.3 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr687 locus 102.3 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr687 locus 135.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr687 locus 97 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-6 Xpsr687 locus 114 () Automated name-based View Maps
Xpsr143 locus 72.6 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr143 locus 0 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr143 locus 2.9 () Automated name-based View Maps
Xpsr151 locus 73.7 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr151 locus 57.8 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr151 locus 0.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr151 locus 56 () Automated name-based View Maps
Xpsr331 locus 85.5 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr331 locus 9.6 () Automated name-based View Maps
Barley - Barley, TxB - Hordeum-Laurie4-2H Xpsr331 locus 31.3 () Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H Xpsr331 locus 127.5 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xpsr331 locus 67.5 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr331 locus 128.7 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr331 locus 45 () Automated name-based View Maps
Xpsr390 locus 73.7 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr390 locus 0.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr390 locus 56 () Automated name-based View Maps
Xpsr540 locus 99.9 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr540 locus 24.7 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr540 locus 130.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr540 locus 29.2 () Automated name-based View Maps
Xpsr549 locus 72.6 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr549 locus 11.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr549 locus 2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr549 locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr549 locus -16 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr549 locus 61.8 () Automated name-based View Maps
Xpsr630 locus 77.4 Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr630 locus 119.9 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr630 locus 107.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr630 locus 63 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr630 locus 4.5 () Automated name-based View Maps
Xpsr901 locus 76.3 Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr901 locus 119.5 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr901 locus 63 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr901 locus 105.7 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr901 locus 9.2 () Automated name-based View Maps
Barley - Barley, TxB - Hordeum-Laurie4-2H Xpsr901 locus 27.8 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr901 locus 3.7 () Automated name-based View Maps
Centromere-2R locus 72.6 Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Centromere-2R locus 46.9 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Centromere-2R locus 43.9 - 57.8 () Automated name-based View Maps
Xrsq805.1(Embp) locus 107.3 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xrsq805.1(Embp) locus 94 () Automated name-based View Maps
APR2.5 locus 0 No other positions
APR2.10 locus 13.6 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.