*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, Ds2 x RxL10, RAPD
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-DxR-RAPD-2R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, Ds2 x RxL10, RAPD [ View Map Set Info ]
Map Name: Secale-DxR-RAPD-2R
Map Start: 0.00
Map Stop: 141.60
Features by Type:
44 locus
44 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 44.       of 2 | Next
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr112 locus 72.60 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr112 locus 0.83 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D Xpsr112 locus 7.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr112 locus 17.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr112 locus 0.00 () Automated name-based View Maps
Xpsr131 locus 67.50 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr131 locus 45.00 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-2D Xpsr131 locus 7.00 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr131 locus 43.90 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr131 locus -64.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr131 locus -3.08 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr131 locus -5.30 () Automated name-based View Maps
Xpsr109 locus 18.10 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr109 locus -3.08 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr109 locus 45.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr109 locus 73.10 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr109 locus -2.10 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr109 locus 20.10 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr109 locus 19.50 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr109 locus -43.20 () Automated name-based View Maps
Xpsr130 locus 67.50 Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr130 locus 45.80 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr130 locus 7.60 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr130 locus 41.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr130 locus -5.60 () Automated name-based View Maps
Xpsr102 locus 75.30 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr102 locus 58.90 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xpsr102 locus 94.40 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr102 locus 48.40 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr102 locus 2.78 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr102 locus 4.20 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr102 locus 49.70 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr102 locus 78.10 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr102 locus 2.30 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr102 locus 86.10 () Automated name-based View Maps
Xpsr107 locus 72.60 Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr107 locus 3.10 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr107 locus -35.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr107 locus -1.67 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr107 locus 2.90 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr107 locus 0.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A Xpsr107 locus 59.00 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xpsr107 locus 85.70 () Automated name-based View Maps
Xpsr388 locus 73.70 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr388 locus 0.80 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr388 locus 2.78 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr388 locus 56.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr388 locus 47.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A Xpsr388 locus 63.00 () Automated name-based View Maps
Xpsr666 locus 18.10 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr666 locus 46.50 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr666 locus 5.40 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-2R Xpsr666 locus 0.00 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr666 locus 21.80 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xpsr666 locus -3.08 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xpsr666 locus -42.60 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr666 locus -43.20 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr666 locus -31.80 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr666 locus 3.90 () Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H Xpsr666 locus 17.70 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xpsr666 locus -92.00 () Automated name-based, Automated name-based View Maps
Xpsr934 locus 130.40 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr934 locus 54.20 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr934 locus 69.50 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr934 locus 68.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2A Xpsr934 locus 86.00 () Automated name-based View Maps
Xpsr900 locus 31.90 Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr900 locus 33.40 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr900 locus -29.20 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr900 locus 29.20 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr900 locus 30.10 () Automated name-based View Maps
Xpsr932 locus 98.60 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr932 locus 23.30 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr932 locus 79.10 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr932 locus 32.40 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr932 locus 75.00 () Automated name-based View Maps
Xpsr609 locus 130.40 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr609 locus 54.20 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-2 Xpsr609 locus 109.70 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Xpsr609 locus 108.70 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr609 locus 72.90 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr609 locus 60.90 () Automated name-based View Maps
Xpsr687 locus 76.30 Rye - Rye, P87 x P105 - Secale-PxP-6 Xpsr687 locus 114.00 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr687 locus 102.30 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr687 locus 98.30 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr687 locus 91.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr687 locus 97.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr687 locus 135.70 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr687 locus 171.80 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr687 locus 3.30 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr687 locus 53.40 () Automated name-based View Maps
Xpsr143 locus 72.60 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr143 locus 0.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr143 locus 2.90 () Automated name-based View Maps
Xpsr151 locus 73.70 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr151 locus 56.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr151 locus 0.80 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xpsr151 locus 57.80 () Automated name-based View Maps
Xpsr331 locus 85.50 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xpsr331 locus 67.50 () Automated name-based View Maps
Barley - Barley, IxT - Hordeum-Laurie5-2H Xpsr331 locus 127.50 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr331 locus 9.60 () Automated name-based View Maps
Barley - Barley, TxB - Hordeum-Laurie4-2H Xpsr331 locus 31.30 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr331 locus 128.70 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr331 locus 45.00 () Automated name-based View Maps
Xpsr390 locus 73.70 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr390 locus 56.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr390 locus 0.80 () Automated name-based View Maps
Xpsr540 locus 99.90 Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr540 locus 130.10 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr540 locus 24.70 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr540 locus 29.20 () Automated name-based View Maps
Xpsr549 locus 72.60 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr549 locus 2.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr549 locus 61.80 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr549 locus -16.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr549 locus 11.30 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr549 locus 0.00 () Automated name-based View Maps
Xpsr630 locus 77.40 Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr630 locus 4.50 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr630 locus 107.20 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr630 locus 63.00 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr630 locus 119.90 () Automated name-based View Maps
Xpsr901 locus 76.30 Barley - Barley, TxB - Hordeum-Laurie4-2H Xpsr901 locus 27.80 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr901 locus 119.50 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr901 locus 105.70 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr901 locus 9.20 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr901 locus 63.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr901 locus 3.70 () Automated name-based View Maps
Centromere-2R locus 72.60 Rye - Rye, P87 x P105, update - Secale-PxP-update-2R Centromere-2R locus 46.90 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Centromere-2R locus 43.90 - 57.80 () Automated name-based View Maps
Xrsq805.1(Embp) locus 107.30 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xrsq805.1(Embp) locus 94.00 () Automated name-based View Maps
APR2.5 locus 0.00 No other positions
APR2.10 locus 13.60 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.