*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, Ds2 x RxL10, RAPD
(Reference Set)
Rye-Rye_2009_consensus
Min.
Correspondences
Align Vertically
Stack
Maps Secale-DxR-RAPD-3R Rye-2009-Consensus-3R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, Ds2 x RxL10, RAPD [ View Map Set Info ]
Map Name: Secale-DxR-RAPD-3R
Map Start: 0.00
Map Stop: 135.20
Features by Type:
38 locus
38 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 38.       of 2 | Next
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-3R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr156 locus 64.20 Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr156 locus 1.40 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD Xpsr156 locus 35.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3B Xpsr156 locus 48.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr156 locus 90.40 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-3 Xpsr156 locus 89.90 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-3D Xpsr156 locus 14.70 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3A Xpsr156 locus 87.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D Xpsr156 locus 2.94 () Automated name-based, Automated name-based View Maps
Xpsr116 locus 62.90 Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr116 locus 79.50 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr116 locus 0.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD Xpsr116 locus 25.00 () Automated name-based, Automated name-based View Maps
Xpsr902 locus 61.60 Rye - Rye, Hannover - Secale-Wricke-3R Xpsr902 locus 10.70 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr902 locus 76.20 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D Xpsr902 locus -3.09 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD Xpsr902 locus -47.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr902 locus -0.80 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-3 Xpsr902 locus 78.10 () Automated name-based View Maps
Est2 locus 64.20 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H Est2 locus 173.20 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Est2 locus 142.40 () Automated name-based View Maps
Barley - Barley, AxK - Hordeum-AxK-3H Est2 locus 155.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Est2 locus 66.60 () Automated name-based View Maps
XksuG53 locus 26.60 Rye - Rye_2009_consensus - Rye-2009-Consensus-3R XksuG53 locus 61.80 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D XksuG53 locus -3.09 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3B XksuG53 locus 15.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-3R XksuG53 locus 24.50 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R XksuG53 locus -16.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD XksuG53 locus -93.00 () Automated name-based, Automated name-based View Maps
Xpsr598 locus 61.60 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3A Xpsr598 locus 63.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D Xpsr598 locus -3.09 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr598 locus -1.10 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr598 locus 76.80 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD Xpsr598 locus -66.00 () Automated name-based, Automated name-based View Maps
Xpsr74 locus 68.30 Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr74 locus 71.00 () Automated name-based View Maps
Barley - Barley, MxG - Hordeum-Laurie3-3H Xpsr74 locus 23.80 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3ABD Xpsr74 locus 62.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr74 locus 5.70 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D Xpsr74 locus 2.94 () Automated name-based, Automated name-based View Maps
Xpsr78 locus 70.90 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3A Xpsr78 locus 131.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr78 locus 73.70 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr78 locus 76.50 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr78 locus 7.80 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr78 locus 1.30 () Automated name-based View Maps
Barley - Barley, MxG - Hordeum-Laurie3-3H Xpsr78 locus 0.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xpsr78 locus 70.90 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xpsr78 locus 58.50 () Automated name-based View Maps
Xpsr1196 locus 26.60 Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr1196 locus -16.70 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr1196 locus 63.50 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-3 Xpsr1196 locus 0.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Xpsr1196 locus 31.20 () Automated name-based View Maps
Xpsr1077 locus 68.30 Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr1077 locus 71.50 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr1077 locus 5.10 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Xpsr1077 locus 59.00 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-3 Xpsr1077 locus 27.50 () Automated name-based View Maps
Xpsr305 locus 20.50 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-3H Xpsr305 locus -56.70 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr305 locus -24.10 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr305 locus 51.40 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr305 locus 56.40 () Automated name-based View Maps
Xpsr754 locus 68.30 Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr754 locus 6.50 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr754 locus 71.00 () Automated name-based View Maps
Xpsr1060 locus 61.60 Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr1060 locus -2.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr1060 locus 76.80 () Automated name-based View Maps
Mal-1 locus 64.20 Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Mal-1 locus 1.40 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3D Mal-1 locus 5.00 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3A Mal-1 locus 5.00 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-1 Mal-1 locus 147.10 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3B Mal-1 locus 5.00 () Automated name-based View Maps
Xpsr543 locus 64.20 Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr543 locus 2.80 () Automated name-based View Maps
Xpsr570 locus 64.20 Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr570 locus 80.60 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr570 locus 2.20 () Automated name-based View Maps
Xwg110 locus 95.70 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-3H Xwg110 locus 86.70 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D Xwg110 locus 98.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xwg110 locus 30.60 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-3 Xwg110 locus 34.00 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xwg110 locus 22.40 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-3A Xwg110 locus 39.10 () Automated name-based View Maps
Centromere-3R locus 61.60 Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Centromere-3R locus 55.60 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-3 Centromere-3R locus 78.10 - 81.90 () Automated name-based View Maps
Xpsr1149 locus 64.20 Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xpsr1149 locus 2.20 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-3 Xpsr1149 locus 81.90 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xpsr1149 locus 80.60 () Automated name-based View Maps
Xttu1935(Hsp17.3) locus 61.60 Rye - Rye, Ds2 x RxL10 - Secale-Devos-3R Xttu1935(Hsp17.3) locus -2.00 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-3A Xttu1935(Hsp17.3) locus -3.50 () Automated name-based View Maps
APR3.5 locus 0.00 No other positions
Xpsr549.1 locus 26.60 No other positions
APR3.6 locus 35.30 No other positions
APR3.7 locus 35.30 No other positions
APR3.1 locus 49.40 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.