*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, Ds2 x RxL10, RAPD
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-DxR-RAPD-4R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, Ds2 x RxL10, RAPD [ View Map Set Info ]
Map Name: Secale-DxR-RAPD-4R
Map Start: 0.00
Map Stop: 175.40
Features by Type:
36 locus
36 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 36.       of 2 | Next
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-4R
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr119 locus 106.30 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr119 locus 37.70 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr119 locus 103.70 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-7D Xpsr119 locus 1.00 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-4 Xpsr119 locus 125.50 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr119 locus -95.00 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xpsr119 locus -72.30 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr119 locus 122.20 () Automated name-based View Maps
Xpsr167 locus 160.60 Rye - Rye, Hannover - Secale-Wricke-4R Xpsr167 locus 111.10 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-6D Xpsr167 locus 1.45 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-4 Xpsr167 locus 163.70 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr167 locus 77.40 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr167 locus 164.70 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr167 locus -65.10 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr167 locus 134.10 () Automated name-based View Maps
Xpsr152 locus 62.60 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr152 locus 29.60 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr152 locus -37.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr152 locus 0.00 () Automated name-based View Maps
Xpsr584 locus 62.60 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr584 locus 0.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr584 locus 53.40 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr584 locus 53.20 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xpsr584 locus -1.91 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xpsr584 locus -61.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-4R Xpsr584 locus 21.90 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-4 Xpsr584 locus 55.20 () Automated name-based View Maps
Xpsr899 locus 163.80 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr899 locus 81.00 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr899 locus -62.80 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr899 locus 127.10 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr899 locus 156.30 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-4 Xpsr899 locus 156.20 () Automated name-based View Maps
Xpsr566 locus 84.10 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr566 locus 16.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr566 locus 146.50 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr566 locus 6.40 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr566 locus 111.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr566 locus 85.80 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr566 locus 3.10 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr566 locus 38.90 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr566 locus 55.50 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-7R Xpsr566 locus 126.90 () Automated name-based View Maps
XksuF48 locus 85.90 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R XksuF48 locus 86.90 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R XksuF48 locus 17.60 () Automated name-based View Maps
Xpsr681 locus 62.60 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr681 locus -0.30 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr681 locus 70.70 () Automated name-based View Maps
Centromere-4R locus 63.50 Rye - Rye, UC90 x E-line - Secale-UxE-4 Centromere-4R locus 10.00 - 28.70 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Centromere-4R locus 54.40 () Automated name-based View Maps
Xpsr604 locus 82.30 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr604 locus 84.10 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-7H Xpsr604 locus -51.30 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr604 locus 14.30 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-4 Xpsr604 locus 31.00 () Automated name-based View Maps
Xpsr662 locus 67.10 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr662 locus 4.20 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-4 Xpsr662 locus 92.90 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr662 locus 75.20 () Automated name-based View Maps
Xpsr8(Cxp3) locus 131.10 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr8(Cxp3) locus -32.60 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xpsr8(Cxp3) locus 34.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B Xpsr8(Cxp3) locus 120.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr8(Cxp3) locus 55.50 () Automated name-based View Maps
Xak466.2(Nra) locus 85.90 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4A Xak466.2(Nra) locus 103.00 () Automated name-based View Maps
Xak466.1(Nra) locus 154.40 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B Xak466.1(Nra) locus 64.00 () Automated name-based View Maps
Ssp1 locus 0.00 No other positions
Xrsq808(Glo) locus 13.60 No other positions
Xbgl485.2(Ger) locus 43.50 No other positions
APR4.9 locus 43.50 No other positions
Xbgl485(Ger) locus 43.50 No other positions
APR4.7 locus 49.90 No other positions
APR4.11 locus 53.20 No other positions
APR4.3 locus 56.20 No other positions
Xnpi253 locus 64.40 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xnpi253 locus 70.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xnpi253 locus 1.40 () Automated name-based View Maps
Xphp10005 locus 65.90 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xphp10005 locus 2.70 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xphp10005 locus 73.60 () Automated name-based View Maps
Xpsr490(ss1) locus 67.10 Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr490(ss1) locus 3.70 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.