*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, Ds2 x RxL10, RAPD
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-DxR-RAPD-5R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, Ds2 x RxL10, RAPD [ View Map Set Info ]
Map Name: Secale-DxR-RAPD-5R
Map Start: 0.00
Map Stop: 179.20
Features by Type:
39 locus
39 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 39.       of 2 | Next
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xksu26 locus 56.10 Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xksu26 locus 0.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xksu26 locus 31.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xksu26 locus 2.78 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-5D Xksu26 locus 15.65 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xksu26 locus 1.30 () Automated name-based View Maps
Xpsr360 locus 56.10 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr360 locus 0.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr360 locus 1.90 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr360 locus 0.00 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr360 locus 4.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr360 locus 53.80 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-5R Xpsr360 locus 0.00 () Automated name-based View Maps
Xpsr370 locus 148.00 Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr370 locus 78.60 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr370 locus 69.50 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr370 locus 97.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr370 locus 84.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr370 locus 5.14 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr370 locus 137.70 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr370 locus 93.90 () Automated name-based View Maps
Xpsr574 locus 57.70 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr574 locus 3.40 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr574 locus 25.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr574 locus 1.30 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xpsr574 locus 51.00 () Automated name-based View Maps
Xpsr628 locus 56.10 Rye - Rye, ExR - Secale-ExR-5 Xpsr628 locus 6.20 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr628 locus 1.30 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-5R Xpsr628 locus 5.40 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr628 locus 0.90 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr628 locus 0.00 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-5 Xpsr628 locus 58.50 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr628 locus 0.00 () Automated name-based View Maps
Xpsr911 locus 89.20 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr911 locus 21.20 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr911 locus 48.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr911 locus 30.50 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr911 locus 78.80 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr911 locus 83.80 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr911 locus 23.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xpsr911 locus 63.00 () Automated name-based View Maps
Xpsr929 locus 56.10 Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr929 locus 0.00 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr929 locus 0.00 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-5R Xpsr929 locus 3.30 () Automated name-based View Maps
Xksu8 locus 71.20 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xksu8 locus 53.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xksu8 locus 13.20 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xksu8 locus 3.51 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xksu8 locus 11.40 () Automated name-based View Maps
Xpsr145 locus 130.70 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr145 locus 115.80 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr145 locus 74.50 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr145 locus 88.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr145 locus 81.00 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr145 locus 53.50 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr145 locus 5.14 () Automated name-based, Automated name-based View Maps
Xpsr79 locus 133.30 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr79 locus 81.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr79 locus 5.14 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr79 locus 50.40 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr79 locus 77.60 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsr79 locus 117.50 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsr79 locus 59.30 () Automated name-based View Maps
Ddw1 locus 165.00 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Ddw1 locus 188.70 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-5 Ddw1 locus 125.90 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Ddw1 locus 104.70 () Automated name-based View Maps
Xpsr100 locus 56.10 Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr100 locus 0.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr100 locus 1.90 () Automated name-based View Maps
Centromere-5R locus 56.10 Rye - Rye, UC90 x E-line - Secale-UxE-5 Centromere-5R locus 58.50 - 63.50 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Centromere-5R locus 52.70 () Automated name-based View Maps
Xpsr426 locus 119.50 Rye - Rye, UC90 x E-line - Secale-UxE-5 Xpsr426 locus 63.50 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr426 locus 43.10 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr426 locus 61.30 () Automated name-based View Maps
Xpsr164 locus 149.60 Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr164 locus 95.50 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xpsr164 locus 99.80 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr164 locus 67.40 () Automated name-based View Maps
Ibf-R1 locus 99.50 Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Ibf-R1 locus 81.20 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xibf-R1 locus 21.20 () Automated name-based View Maps
Xpsr1327 locus 21.00 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr1327 locus 122.10 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr1327 locus 38.10 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr1327 locus 84.90 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr1327 locus 0.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-7R Xpsr1327 locus 70.20 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xpsr1327 locus 60.00 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr1327 locus -39.50 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr1327 locus 35.40 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xpsr1327 locus 13.00 () Automated name-based View Maps
Xpsr1194 locus 133.30 Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr1194 locus 58.10 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr1194 locus 75.60 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr1194 locus 90.00 () Automated name-based View Maps
Xpsr120.2 locus 56.10 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr120.2 locus 73.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr120.2 locus 36.80 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xpsr120.2 locus 84.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr120.2 locus 24.20 () Automated name-based View Maps
APR5.3 locus 0.00 No other positions
APR5.4 locus 16.40 No other positions
Xubp3 locus 39.30 Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xubp3 locus -17.70 () Automated name-based View Maps
APR5.7 locus 44.40 No other positions
APR5.1 locus 44.40 No other positions
APR5.9 locus 52.30 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.