*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, Ds2 x RxL10, RAPD
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-DxR-RAPD-7R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, Ds2 x RxL10, RAPD [ View Map Set Info ]
Map Name: Secale-DxR-RAPD-7R
Map Start: 0
Map Stop: 142.5
Features by Type:
50 locus
50 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 50.       of 2 | Next
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-7R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr129 locus 92.8 Rye - Rye, UC90 x E-line - Secale-UxE-7 Xpsr129 locus 63.4 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr129 locus 61.9 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-7R Xpsr129 locus 78.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr129 locus 13.9 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xpsr129 locus 22.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr129 locus 84 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr129 locus 79.4 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-7D Xpsr129 locus 15.65 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr129 locus 115.2 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xpsr129 locus 46 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-7 Xpsr129 locus 46.7 () Automated name-based View Maps
Wheat ABD - Wheat_Fhb7_2020 - Wheat_Fhb7_2020 Xpsr129 locus 4 (cM) Automated name-based View Maps
Xpsr163 locus 71.8 Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr163 locus 0 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-4D Xpsr163 locus 8.85 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xpsr163 locus 2.73 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xpsr163 locus 44 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr163 locus 36.5 () Automated name-based View Maps
Aat2 locus 73 Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Aat2 locus 84.8 () Automated name-based View Maps
Barley - Barley genes 2 - Hordeum-Genes2-6H Aat2 locus -53 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H Aat2 locus 133.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R XAat2 locus 41.6 () Automated name-based View Maps
Xpsr104 locus 71.8 Rye - Rye, UC90 x E-line - Secale-UxE-7 Xpsr104 locus 6.9 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr104 locus 0 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr104 locus 13.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xpsr104 locus 2.73 () Automated name-based, Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Xpsr104 locus 18.1 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-4 Xpsr104 locus 69 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xpsr104 locus 44 () Automated name-based, Automated name-based View Maps
Xpsr303 locus 73 Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr303 locus 92.4 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr303 locus 35.4 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-7 Xpsr303 locus 28.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr303 locus 2.5 () Automated name-based View Maps
Xpsr311 locus 71.8 Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr311 locus 36.5 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xpsr311 locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr311 locus 0 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-7 Xpsr311 locus 30 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr311 locus 27 () Automated name-based, Automated name-based View Maps
Xpsr580 locus 30.6 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr580 locus 93 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr580 locus 14.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr580 locus -42 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr580 locus 13.7 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr580 locus 21.6 () Automated name-based View Maps
Xpsr690 locus 71.8 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xpsr690 locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr690 locus 0 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-7 Xpsr690 locus 19.9 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xpsr690 locus 48 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr690 locus 28.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr690 locus 24.5 () Automated name-based, Automated name-based View Maps
Xpsr1051 locus 64.1 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A Xpsr1051 locus 15.3 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xpsr1051 locus 4.94 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xpsr1051 locus 91 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr1051 locus -7.6 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr1051 locus 43.4 () Automated name-based View Maps
Xpsr150 locus 109.3 Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr150 locus 52.9 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr150 locus 29 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr150 locus 38.5 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr150 locus 6.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr150 locus 53.2 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr150 locus 9.4 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-4R Xpsr150 locus 53.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr150 locus -41 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-4 Xpsr150 locus 57.9 () Automated name-based View Maps
Xpsr567 locus 15.5 Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr567 locus 0 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr567 locus 6.2 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A Xpsr567 locus 67.1 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr567 locus 0 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr567 locus -58.5 () Automated name-based View Maps
Xpsr115 locus 53.3 Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr115 locus 22.8 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr115 locus 145.9 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_31 Xpsr115 locus 138.5 (cM) Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-5 Xpsr115 locus 60 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A Xpsr115 locus 28.4 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr115 locus 23.2 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr115 locus 23.3 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr115 locus -17.9 () Automated name-based View Maps
Xpsr59 locus 70.2 Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr59 locus -0.4 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr59 locus 47 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr59 locus 59.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr59 locus 36.5 () Automated name-based View Maps
Xpsr547 locus 103.3 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xpsr547 locus 24.3 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Xpsr547 locus 64.5 (cM) Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr547 locus 68.7 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr547 locus 23.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xpsr547 locus 90 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr547 locus 85.5 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-7 Xpsr547 locus 82 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr547 locus 121.3 () Automated name-based View Maps
Xpsr928 locus 111.3 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xpsr928 locus -59.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr928 locus 40.1 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr928 locus 53.8 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr928 locus 98.3 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr928 locus 134.5 () Automated name-based View Maps
Xpsr566 locus 126.9 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-4R Xpsr566 locus 84.1 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr566 locus 146.5 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr566 locus 111 () Automated name-based View Maps
Barley - Barley, CxHs - Hordeum-Laurie2-2H Xpsr566 locus 3.1 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr566 locus 6.4 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-4R Xpsr566 locus 16 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xpsr566 locus 85.8 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr566 locus 55.5 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr566 locus 38.9 () Automated name-based View Maps
XksuD9 locus 71.8 Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R XksuD9 locus 0.4 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R XksuD9 locus 35.4 () Automated name-based View Maps
XksuF8 locus 71.8 Rye - Rye_2009_consensus - Rye-2009-Consensus-7R XksuF8 locus 34.3 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R XksuF8 locus 0 () Automated name-based View Maps
Xpsr649 locus 129.8 Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr649 locus 58.8 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr649 locus 35.4 () Automated name-based View Maps
Xpsr946 locus 28.8 Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr946 locus -43.9 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr946 locus 6.7 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-3A Xpsr946 locus -21.7 () Automated name-based View Maps
Centromere-7R locus 71.8 Rye - Rye, UC90 x E-line - Secale-UxE-7 Centromere-7R locus 15.7 - 19.9 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Centromere-7R locus 70.2 () Automated name-based View Maps
Xpsr1327 locus 70.2 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xpsr1327 locus 60 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr1327 locus 122.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr1327 locus -39.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-5R Xpsr1327 locus 21 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr1327 locus 35.4 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr1327 locus 84.9 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xpsr1327 locus 13 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr1327 locus 38.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr1327 locus 0 () Automated name-based View Maps
APR7.11 locus 0 No other positions
APR7.1 locus 24.8 No other positions
APR7.2 locus 67.6 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.